Lsuf022494.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402560.1:18134343-18153068[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-10 1.6e-07 31.8 0.0 4 39 178 214 175 218 0.89 2 4 9.3e-11 4.6e-08 33.6 0.3 2 39 230 267 229 270 0.92 3 4 1.4e-16 6.8e-14 52.2 0.1 2 45 285 329 284 329 0.96 4 4 3.7e-17 1.8e-14 54.0 0.1 2 43 337 379 336 381 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGCTTCGGAACTGCTGTCGTGAAATGTGAGCCTACGTCTGATGAAGAAGATGACAGTCTTCATTTGCCAGACCACTGCCTAAATAATACGATTGCCCCAGAATTCCATTCATTGACATCGGTAAAATTAGAAGCCGGTTGCTACAGAAGTGGTGTCAAGGGTATGCCGACTTTGCTTCATCACTTACGACAAAGTCCTGAAGCGCTGGAAGAGCTGGCCCCACTGGCGCCGGCGGGACCCGCGGCCACTCCCGTCTGCGTGAAGCAGGAGGCGGTGGAGACCCCTGCCATCCTGGAGACCTTGGAGTCTGCTCCACATTGCACTAGCTTTTTTTTGGAGAGACACATGACGATATTGAGATCGAATGAAGTGCCGCACTTCACCAACTTTGCGCCGCTCCAAACGGTCAAGGATGAACCCTCTTCTGAAGGAGAACAACATCACCACAGCAGCGATGAGTTGAGCGACTCGTGCGGCCTGACAGAGGCCAGCATACGCGGCAGTCCAAAGAGCTGGACTCAGCAGGACATGGACAACGCATTAGATGCACTTAAAAATCGCAACATGAGTTTGACTAAGGCTTCATCAACATACGGCATCCCATCGACCACTCTCTGGCAGCGCGCGCATCGGCTCGGGATCGACACTCCGAAGAAGGAAGGAGCCACCAAGTCGTGGAGCGAGGCTGACCTGCGCGGGGCCCTCCACGCCCTGAGAGCCGGCGCTATATCTGCTAACAAGGCCAGCAAGGCTTACGGTATCCCGAGCAGCACACTGTACAAGATAGCGCGACGTGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCGTGTCGTGGCGGCGCGGGGACCTGGCGCGGGCGCTCGCCGCCATCCGCGCCGGCCGCGTCTCCGTGCAGAGAGCCGCCTCGCAGTACGGGATACCCACTGGCACTCTCTATGGGCGTTGTAAACGTGAAGGAATAGAGCTATCTCGATCGAACCCTACGCCTTGGTCTGAAAATGCCATGGGTGAAGCACTTGAAGCGGTCAGGGTGGGTCAAATGTCAATAAACCAGGCAGCCATTCACTACAATTTGCCATATTCATCACTTTACGGAAGGTTCAAGCGGTGCAAGTATCAGGCCCGGCCCACTCCACCACAAGAAGTGCAAAATACTCCTGAGATGGTTCACAACCATCAAGAAATAAACTATTACCAGATGCCCATGTACCCAGAACAGGACCATTCTACGATACAACATCCATACCCTAACGAGTTCTTGCCAGATTCCTCAACGCAGAACATGGTTCTACAAGATTATCCAGGACAAGCTATGTATTACAGCCAGAATTTTAGCAGCATAGCGACTAGCTGA
- Protein Sequence
- MPGFGTAVVKCEPTSDEEDDSLHLPDHCLNNTIAPEFHSLTSVKLEAGCYRSGVKGMPTLLHHLRQSPEALEELAPLAPAGPAATPVCVKQEAVETPAILETLESAPHCTSFFLERHMTILRSNEVPHFTNFAPLQTVKDEPSSEGEQHHHSSDELSDSCGLTEASIRGSPKSWTQQDMDNALDALKNRNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGATKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGRVSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSENAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQARPTPPQEVQNTPEMVHNHQEINYYQMPMYPEQDHSTIQHPYPNEFLPDSSTQNMVLQDYPGQAMYYSQNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663004;
- 90% Identity
- -
- 80% Identity
- -