Ptra001888.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004337.1:22787431-22795092[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-09 2.4e-07 31.4 0.0 4 39 183 219 180 223 0.89 2 4 3.3e-10 5.3e-08 33.5 0.3 2 39 235 272 234 275 0.92 3 4 9.2e-15 1.5e-12 48.1 0.1 2 45 290 334 289 334 0.96 4 4 1.8e-17 3e-15 56.7 0.0 1 43 341 384 341 385 0.96
Sequence Information
- Coding Sequence
- ATGCGAAGTTCCGAAACAGCTGCCGTAAAATGTGAGCCTCTGTCTGACGAAGAAGACAATACTCATCAGTTACCTGACCTCTTTCTAAATCATACGCTACCTGAATTCCACGCCCTCACTTGTGTTAAAGTAGAAACAGGAAGTCGCAACGATGAGGGTCACAGAGTACATAGCAGCAGCGGTATGCCGACTTTGCTGCACCATTTACGGAGTCCGGATGGACTGGAAGAACTTGCCCCACTAGCGCCAGCCGGGCCCGCGGCGACACCCGTTTGCGTGAAACAAGAACCAGTTGAAACCCCTGCCCTCAATCTGGAGACTTTGGAACCGGTGCCGCATAGCACGGGCTCTCTACTGGAGAGACACATGGCGATAGTGAGGTCATCTGAAGTGCCCGACTCCGGTAACTTCACGCCGCTGCAAACTGTCAAGGATGAACCGTCTTCTGAAGGAGAGCAACATCACCTCAGTAGTGATGAGCTGAGCGACTCTTGTGGGCTAGCGGAGCCCTGCGCGCGCGGGAGCCCCAAGAGCTGGACGCAGCGGGACATGGACAATGCACTGGATGCTCTGAAGAATCACAACATGAGTTTGACTAAGGCGTCATCAACATACGGCATCCCATCTACCACTCTGTGGCAGCGCGCCCACCGACTCGGCATCGACACGCCGAAGAAGGAGGGCGCCGCCAAGTCCTGGAGTGAGGCCGACCTGCGCGGGGCACTCCACGCACTGAGGGCCGGCGCTATATCAGCCAACAAGGCTAGTAAGGCTTATGGTATCCCCAGCAGCACGTTGTATAAGATAGCGCGTCGTGAGGGCATCCGGCTGGCTGCGCCATTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGCGACCTGCAGCGCGCACTCGCCGCCATCCGCGCCGGCCGCGCCTCCGTGCAGCGAGCCGCCTCGCAGTATGGGATCCCTACTGGTACTCTCTATGGGCGTTGTAAACGGGAAGGCATAGAGTTGTCCCGATCGAACCCTACTCCTTGGTCAGAAGACGCCATGGGCGAGGCATTGGAAGCTGTCAGAGTCGGTCAGATGTCCATCAACCAGGCAGCTATTCATTACAACTTGCCATATTCATCGCTGTACGGGAGATTCAAGCGGTGCAAGTATCAGACTCCGCCAATGCCACAAGAAGTGCATAATCCTCCTGAGATGAACCACCCCAGCCACAATCAAGAGCTCAACTACTACCACCAAATGCCAATGTACCCGGACCAAGAGCACTCCATCCACCAACCACCGTATCCACACGAGTTCGTCCAAGAACATACTCTCACGTCGAACATGATGCTCCAAGACCCTTATTCAGGACAGGCGATGTATTACAACCAGAGCTTCAACAGTATAGCGACTAGCTGA
- Protein Sequence
- MRSSETAAVKCEPLSDEEDNTHQLPDLFLNHTLPEFHALTCVKVETGSRNDEGHRVHSSSGMPTLLHHLRSPDGLEELAPLAPAGPAATPVCVKQEPVETPALNLETLEPVPHSTGSLLERHMAIVRSSEVPDSGNFTPLQTVKDEPSSEGEQHHLSSDELSDSCGLAEPCARGSPKSWTQRDMDNALDALKNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLQRALAAIRAGRASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTPPMPQEVHNPPEMNHPSHNQELNYYHQMPMYPDQEHSIHQPPYPHEFVQEHTLTSNMMLQDPYSGQAMYYNQSFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663004;
- 90% Identity
- -
- 80% Identity
- -