Coce012183.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776255.1:613158-618962[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8e-10 1.6e-07 31.6 0.0 4 39 188 224 185 228 0.89 2 5 4.6e-11 4.1e-08 33.5 0.3 2 39 240 277 239 280 0.92 3 5 2e-14 1.8e-11 44.3 0.1 2 45 295 339 294 339 0.96 4 5 1.7e-16 1.5e-13 50.9 0.0 1 42 346 388 346 391 0.92 5 5 3.2 2.9e+03 -1.2 0.1 16 25 391 400 388 400 0.83
Sequence Information
- Coding Sequence
- ATGCCGAACTCTGGAATTGGTGCCATTAAATGCGAGCCTCCGTCAGATGAAGAAGATGACAGTCCACAGATGCCTGACCTATTCCTAAATAATACGCTCGGCTCAGAGTTCCATTCCCTGACTTCTGTGAAAGTGGAAGCGGGTTGCCACACGGGCGAGGGTATGCCGACGCTATTGCACCACTTACGAGCAGCAGAGGTAATTGAGAAGATTATTAAACAGGAGAGTCCTGAAGCCCTGGAGGAACTGGCCCCGCTGGCACCAGCAGGGCCCGCGGCAATCCCGGTCTGCGTGAAGCAGGAACCGGTGGAGACACCTGCCATCGACCTGGAGACCTTAGAATCTGCTCCACATTGCACGGGCTCTTTTATGGAAAGGCACATGGCGATATTGAGATCAAGTGAAGTGCCCGACTCCACAAACTTTGCACCTCTACAAATGGTCAAGGATGAACCTTCCTCTGAAGGAGAACAACAGTATCTCAGCAGCGACGAGCTGAGCGACTCCTGTGGCTTGGCGGAGCCTTGCACGCGAGGGAGCCCCAAGAGCTGGACACAGCACGACATGGACAACGCACTGGACGCGCTCAAAAATCACAACATGAGTTTGACTAAGGCATCATCGACTTACGGGATCCCATCGACCACTCTCTGGCAGCGGGCGCACCGGCTCGGCATCGACACCCCGAAAAAGGAAGGTGCTTCAAAATCGTGGAGCGAGGCGGACCTGCGCGGGGCACTCCATGCCCTGAGGGCCGGCGCCATCTCCGCCAACAAGGCTAGTAAAGCTTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAAGGCATCCGTCTGGCGGCGCCCTTCAACGCGGCGCCGGTGGCGTGGCGCCGCGGGGACCTGGCGCGCGCGCTGGGCGCCATCCGCGCCGGCCGCGCCTCCGTGCAGCGCGCCGCCGCGCAGTACGGCATCCCCACCGGCACTCTCTATGGACGTTGTAAACGGGAGGGCATCGAGCTGTCTCGATCGAACCCTACGCCTTGGTCTGAGGACGCGATGGGTGAAGCGCTCGGAGCCGTCAGGGTCGGTCAGATGTCAATAAATCAGGCAGCCATTCATTACAATTTGCCGTATTCATCACTTTACGGAAGATTCAAGCGGTGCAAATTTCAAGCTCAGGCCATGTCAACACAAGAAGCGCAAAGCATCCCTGAAATGGTTCAAAACCAGCAGGAAATAAACTATTATCATCAGATGCCCATGTACCAGGAACAAGAGCATCCCGCGATCCAACACCCGTACCCTCACGAGTTTGTGCCAGATTCCCTGGCGCAGAATACCATGGTCTTACAAGAGCATTATTCAGGACAAGCTATGTATTACAGCCAAAACTTTAGTAGTATAGCGACTAGTTGA
- Protein Sequence
- MPNSGIGAIKCEPPSDEEDDSPQMPDLFLNNTLGSEFHSLTSVKVEAGCHTGEGMPTLLHHLRAAEVIEKIIKQESPEALEELAPLAPAGPAAIPVCVKQEPVETPAIDLETLESAPHCTGSFMERHMAILRSSEVPDSTNFAPLQMVKDEPSSEGEQQYLSSDELSDSCGLAEPCTRGSPKSWTQHDMDNALDALKNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLARALGAIRAGRASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALGAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKFQAQAMSTQEAQSIPEMVQNQQEINYYHQMPMYQEQEHPAIQHPYPHEFVPDSLAQNTMVLQEHYSGQAMYYSQNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663004;
- 90% Identity
- -
- 80% Identity
- -