Eram031221.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947578815.1
- Location
- OX388209.1:25072711-25089685[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-74 1.3e-69 235.7 22.7 1 264 119 380 119 403 0.88 2 2 0.077 2.7e+03 -1.7 8.8 115 167 419 471 408 479 0.66
Sequence Information
- Coding Sequence
- ATGGGCCTTCAGTCCAAAAGCGCAACACCTGACAATAGCGACGAGGAGAGCGGTGAAGCGTTCACCGACGGAGACTTCGGTGACTCCGATGACGAAATAAACATAGAAGTAGACGTAGTAGATCGTAGCGATGATTCCAAAACGTCCCCGGTCCCTGTCGAAACGGTTAACACGGAGCTCGCAGGCATGGAGGTCGCGCACGGCGCCCGCAATGGTTTCGAACACGATCATGCTAAAGTTAACGGAGTCAAGAACGACGGCGGGGAATGTGTCGCGATGCCCGAGATCCGGCGCGACTCGCACGGCGAGCAGAATCCCTCCATCGTCGGCATTCTCGGCGGACAACAGGATCATGCGGAACAACGGCTAGCGGCGCGTCGTGCGGCGCGGGCGGAGGCGCGCGAGATACGCATGCGCGAGCTCGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCTGACAAGGCCTACGACATGTACGCCGAGACAGTGGGTCGGCGCGCGGGCACCCGATTGACGGCGCTGAGCCCCGCGCTGCACCACACGCCGCGCCGCGCCTCCGAGGACTCCGCCGATGACTCCTTCAACGTCAAGGATCTCAGGGGGGAGTTAAAAGAAGTAGAGGAAAAGTTCCGAAAGGCCATGATCCTGAACGCACAGCTCGATAACGACAAAGCGGCGCTGGGTTATCAGCTCGAGCTACTAAAGGACCGTATTGAGGAGCTACAGATGGACTACGCGCAGTTACAGCGCGAGCACAAAGAGAAATGCTCCGCCCACGAGCGTCTAAAACGCGAGCACGCGTCCCTCGAGCGGGAGCTCGGCTCCGCGCGGGACGCGGTCCGGGCGCGGGACGCGGCGGCCGCGGACGCGGGCTTCGCGTTCGTGGACGCGGCTCCCGCTCCCGCTCCCGCGGCCAACGGCGACGAGGGACACGTGCACGCGTTCCCGCCGCTGGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCGGGAGAGGGGACGCTAGACGTCCGGTTGCAAAAGCTGCTAAGCGCGAAGCAGTCTCTAGAAAGCGAGGTGCGGCGTCTCAAACTACAGTTGAACGAGGAGCGACACAACGGCGTGGCGCGCGCGCACGACCAGGACCTTGAGGAGGAACTGGAGGCCCTCCGCAAGTCGAATGCGGAAGCGAAGGCGCGTGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCCGCGGCGGGCGCGCGGCTCGCGGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACCTCCGCGACGACGCCGAGGAACAGCTCAAGCAGGAGCGGAGGAAGCTGCAGAGAGAGGCCCGAGAGGCGCTGAACCGAGTGGAGGAGCTTGAGACCGAGAACAGCCATCTCACCAAGCGGCTCGACAAACTGAAGAACGCCAAGTCCGCGCTACTGAAGGAGCTGTGA
- Protein Sequence
- MGLQSKSATPDNSDEESGEAFTDGDFGDSDDEINIEVDVVDRSDDSKTSPVPVETVNTELAGMEVAHGARNGFEHDHAKVNGVKNDGGECVAMPEIRRDSHGEQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGTRLTALSPALHHTPRRASEDSADDSFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQMDYAQLQREHKEKCSAHERLKREHASLERELGSARDAVRARDAAAADAGFAFVDAAPAPAPAANGDEGHVHAFPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSAKQSLESEVRRLKLQLNEERHNGVARAHDQDLEEELEALRKSNAEAKARAARAEAEAALQAAAGARLAAQLQRLKAQADLRDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00656161; iTF_00657222; iTF_00658418; iTF_00289631;
- 80% Identity
- -