Ebru030146.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_963854355.1
- Location
- OY977943.1:30882873-30902823[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-76 6.8e-71 241.0 25.7 1 266 118 377 118 399 0.90 2 2 0.18 1.4e+04 -2.9 9.7 119 166 418 465 403 474 0.45
Sequence Information
- Coding Sequence
- ATGGGCCTTCAGTCCAAAAGCGCAACACCTGACAATAGCGACGAAGAGAGCGGGGAGGCATTCACCGACGGAGACTTTGGTGACTCCGATGATGAAATAAACATAGAAGTAGACGTAGTAGATCGTAGCGATGATTCAAAAACGTCCCCGGTCCCTGTCGAAACGGTTAACACGGAGCTCGCAGGTATGGAGGTCGCGCACGGCGTCCGCAATGGTTTCGAACATGATCATGCTAAAGTTAACGGAGTCAAGAACGACGCGGAATGTGTCACGATGCCTGAGATCCGGCGCGACTCGCACGGCGACCAGAGCCCCTCCATCGTCGGCATTCTCGGCGGCCAACAGGATCATGCGGAGCAACGGCTAGCGGCGCgtcgcgcggcgcgggcggagGCGCGCGACATACGCATGCGCGAGCTCGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCTGACAAAGCCTACGACATGTACGCCGAGACGGTGGGGCGGCGCGCGGGCACCCGGCTGACGGCGCTGAGCCCCGCGGTGCAccacacgccgcgccgcgcctccGAGGACTCCGCCGATGACTCCTTCAATGTCAAGGATCTCAGGGGGGAGTTAAAAGAAGTAGAGGAGAAGTTCCGAAAGGCCATGATCCTGAACGCACAGCTGGACAACGACAAAGCGGCGCTTGGTTACCAGCTCGAGCTACTGAAGGACCGCATTGAGGAGCTACAGGAGGACTACGCGCAGTTACAGCGCGAGCACAAAGAGAAATGCTCCGCCCATGAGCGTCTAAAACGCGAGCACGCGTCCCTCGAGCGGGAGCTAGGGTCCGCGCGGGACGCGGTCCGCGCGCGGGACGCGGCCGCCGCGGACGCGGGCTTCGCGTTCGTGGACGCGGCTCCCGCGGCCAACGGGGACGAGGGACAGCTGCACACGTTCCCGCCGCTGGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCGGGAGAGGGGACGCTAGACGTCCGGTTGCAAAAGCTGCTAAGTTCGAAGCAGTCTCTGGAGAGCGAGGTGCGACGCCTCAAACTGCAGCTGAACGAGGAACGACACAATGgcgtcgcgcgcgcgcacgaTCAGGACCTCGAGTCGGAACTGGAGGCCCTTCGCAAGTCAAACGCGGAAGCgaaggcgcgcgcggcgcgggcggaggccgaggccgcactgcaggccgcggccggcgcgcgcctGGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAACAGCTCAAGCAGGAACGGAGGAAGCTGCAGAGAGAGGCCCGGGAGGCATTAAACCGAGTGGAGGAGCTCGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAACTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGLQSKSATPDNSDEESGEAFTDGDFGDSDDEINIEVDVVDRSDDSKTSPVPVETVNTELAGMEVAHGVRNGFEHDHAKVNGVKNDAECVTMPEIRRDSHGDQSPSIVGILGGQQDHAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMYAETVGRRAGTRLTALSPAVHHTPRRASEDSADDSFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEDYAQLQREHKEKCSAHERLKREHASLERELGSARDAVRARDAAAADAGFAFVDAAPAANGDEGQLHTFPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQSLESEVRRLKLQLNEERHNGVARAHDQDLESELEALRKSNAEAKARAARAEAEAALQAAAGARLAAQLQRLKAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00660334;
- 80% Identity
- -