Ccan014588.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951800055.1
- Location
- OX637478.1:2390113-2406164[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-75 9.3e-71 239.7 24.0 1 265 118 376 118 399 0.90 2 2 0.49 2e+04 -4.3 11.7 119 168 411 460 381 474 0.46
Sequence Information
- Coding Sequence
- ATGGGGGTTCAGACTAAAAGCGCAACACCTGGCAATAGCGACGAGGAGAGCGGTGAAGAGTTCACCGACGCAGATTTCGGTTACTCCGATGACGAAATAAACATAGAATTAGATGTAGAGCGTAGCGATGATTCCAAAACATCCCCCATCCCTATCGAAACGGTTAACACGGAGCTCGCAGGCTTGGAGGCCGCGCACGGCGTCCGCAATGGTTTCGAACATGATCTTGCTATAGTTAACGGGCTCGAGAACGAAGGCGAGGAATGTGTCGCGATGCCTGAGATCCGGCGTGACTCTCACGGCGACCAGAACCCCTCCATCGTCGGCATTCTCGGCGGACAACAGGACCATGCGGAGCAGCGGCTAGCGGCGcgtcgggcggcgcgggcggagGCGCGCGAGATACGCATGCGCGAGTTGGAGCGGCAGCAGCGCGAACAGGAGGATCATGCCGACAAAGCCTACGATATGTACGCCGAAACGGTGGGGCGGCGCGCGGGCACCCGGCTGACGGGGCTGAGCCCCGCGGCGCACCACACGCCGCGGCGGGCCTCCGAGGACTCCGCCGATGACTCCTTCAACGTCAAGGATCTCAGGGGGGAGTTAAAAGAAGTAGAAGAGAAATTCCGAAAGGCCATGATCCTGAATGCGCAACTAGACAATGACAAAGCGGCGCTTGGTTATCAGCTCGAGCTGCTCAAGGACCGTATCGAGGAGCTGCAGGAGGACTACGCGCAGTTACAGCGCGAGCACAAAGAGAAATGCTCCGCCCACGAGCGTCTAAAACGCGAGCACGCGTCCCTCGAACGGGAGCTGGGCGCGGCGCGGGACGCCGTGCACGCGCgcaacgccgccgccgccgacgcggGCTTCGCCTTCGTCGACGCCGCGCCCGCGGCTAATGGAGACGAGGGGCAGGTGCACACCTTCCCGCCTCTCGCGCTCGTGTCGCACCAGAACGAGAAGCTGCTGAACGACGCGGGAGAAGGCACGCTAGACGTGCGGTTGCAGAAGTTATTGAGCGCGAAGCAAGCTTTGGAGAGTGAGGTGCGCCGTCTCAAGCTGCAGCTCAACGAGGAGCGCCACAACGGCGTGGCGCGCGCCAACGACCACGAGCTAGAGTCCGAACTGGAGGCGCTCCGCAAGTCATCGGCGGAGGCGaaggcgcgcgcggcgcgggccgAAGCGGAGGCGGCGCTGCAGGCCGCGGGGGCGGCTCGCCTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGAGCGACGCGCGCGACGACACCGAGGAGCAGCTCAAGCAGGAGCGGAGGAAGCTGCAGAGGGagGCCCGAGAAGCTCTAAACCGAGTTGAGGAGTTGGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAACTCAAGAACGCCAAGTCAGCGCTGCTCAAGGAACTGTGA
- Protein Sequence
- MGVQTKSATPGNSDEESGEEFTDADFGYSDDEINIELDVERSDDSKTSPIPIETVNTELAGLEAAHGVRNGFEHDLAIVNGLENEGEECVAMPEIRRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGTRLTGLSPAAHHTPRRASEDSADDSFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEDYAQLQREHKEKCSAHERLKREHASLERELGAARDAVHARNAAAADAGFAFVDAAPAANGDEGQVHTFPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSAKQALESEVRRLKLQLNEERHNGVARANDHELESELEALRKSSAEAKARAARAEAEAALQAAGAARLAAQLQRLKAQSDARDDTEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00660334;
- 80% Identity
- -