Edem004331.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000061.1:1125600-1148888[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-75 4.3e-70 237.9 24.6 1 265 119 377 119 402 0.89 2 2 0.12 6.2e+03 -2.3 10.4 119 170 412 463 405 475 0.59
Sequence Information
- Coding Sequence
- ATGGGCCTTCAGTCCAAAAGCGCAACACCTGACAATAGCGACGAGGAGAGCGGTGAAGCGTTCACCGACGGAGACTTCGGTAACTCCGATGACGAAATAAACATAGAAGTAGACGTAGTAGATCGTAGCGATGATTCCAAAACGTCCCCGGTCCCGGTAGAAACGGTTAATACGGAGCTCGCAGGCATGGAGGTCGCGCACGGCGCCCGCAATGGTTTCGACCACGATCATGCTAAAGTTAACGGAGTCAAGAACGACGGCGGGGAATGTGTCGCGATGCCTGAGGTCCGGCGCGACTCGCACGGCGAGCAGAATCCCTCCATCGTCGGCATTCTCGGCGGACAACAGGATCATGCGGAACAACGGCTAGCGGCGCgtcgcgcggcgcgggcggaggCGCGCGAGATACGCATGCGCGAGCTCGAGCggcagcagcgcgagcaggaGGACCATGCTGACAAGGCCTACGACATGTACGCCGAGACGGTGGGTCGGCGCGCGGGCACCCGATTGACGGCGCTGAGCCCCGCGGTGCACCacacgccgcgccgcgcctccgAGGACTCCGCCGATGACTCCTTCAACGTCAAGGATCTCAGGGGGGAGTTAAAAGAAGTAGAGGAGAAGTTCCGAAAGGCCATGATCCTGAACGCACAGCTGGACAATGACAAAGCGGCACTGGGCTACCAGCTCGAGCTACTGAAGGACCGTATTGAGGAGCTACAGATGGACTACGCGCAGTTACAGCGCGAGCACAAAGAGAAATGCTCCGCCCACGAGCGTCTAAAACGCGAGCACGCGTCCCTCGAGCGGGAGCTCGGGTCCGCGCGGGACGCGGTGCGGGCGCGGGACGCGGCGGCCGCGGACGCGGGCTTCGCGTTCGTGGACGCGGCTCCCGCGGCCAACGGAGACGAGGGACACGTGCACGCGTTCCCGCCGCTGGCGCTCGTGTCGCACCAGAATGAGAAGCTGCTGAATGACGCGGGAGAGGGGACGTTAGACGTCCGGTTGCAAAAGCTGCTAAGCGCGAAGCAGTCTCTAGAGAGCGAGGTGCGGCGCCTCAAACTACAGTTGAACGAGGAGCGACACAACGGCGTGGCGCGCGCGCACGACGAGGACCTTGAGTCAGAACTGGAGGCCCTCCGCAAGTCGAACGCGGAAGCGAAGGCCCGCGCGGCTCGGGCGGAGGCCGAGGCGGCGCTGCAggccgcggcgggcgcgcggctcgcggcgcagctgcagcggctCAAGGCGCAGGCCGACGCCCGCGACGAGGCTGAGGAACAGCTCAAGCAGGAGCGGAGGAAGCTGCAGAGAGAGGCCCGGGAGGCGCTGAACCGAGTGGAGGAGCTTGAGACGGAGAACAGCCATCTCACCAAGCGGCTCGACAAACTCAAGAACGCCAAGTCCGCGCTACTCAAGGAGCTGTGA
- Protein Sequence
- MGLQSKSATPDNSDEESGEAFTDGDFGNSDDEINIEVDVVDRSDDSKTSPVPVETVNTELAGMEVAHGARNGFDHDHAKVNGVKNDGGECVAMPEVRRDSHGEQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGTRLTALSPAVHHTPRRASEDSADDSFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQMDYAQLQREHKEKCSAHERLKREHASLERELGSARDAVRARDAAAADAGFAFVDAAPAANGDEGHVHAFPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSAKQSLESEVRRLKLQLNEERHNGVARAHDEDLESELEALRKSNAEAKARAARAEAEAALQAAAGARLAAQLQRLKAQADARDEAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00660334;
- 80% Identity
- -