Dval003751.1
Basic Information
- Insect
- Drosophila vallismaia
- Gene Symbol
- -
- Assembly
- GCA_035047325.1
- Location
- JAWNPU010000025.1:13577787-13580707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.6 4e+02 1.9 1.6 2 23 150 172 149 172 0.93 2 13 0.0032 0.28 11.9 1.5 2 23 187 209 186 209 0.95 3 13 4.1e-06 0.00036 21.0 4.2 2 23 216 238 215 238 0.96 4 13 0.0095 0.83 10.4 9.0 2 23 484 505 484 505 0.97 5 13 1.7e-06 0.00015 22.2 2.9 1 23 511 534 511 534 0.95 6 13 0.00017 0.015 15.9 0.4 1 23 539 562 539 562 0.96 7 13 5.7e-05 0.0049 17.4 5.5 1 23 580 602 580 602 0.96 8 13 8e-05 0.007 16.9 1.1 1 23 607 629 607 629 0.98 9 13 3e-05 0.0026 18.3 1.7 1 23 635 657 635 657 0.95 10 13 2.1e-05 0.0018 18.8 0.7 1 23 663 685 663 685 0.98 11 13 3.1e-07 2.7e-05 24.5 2.7 3 23 693 713 692 713 0.99 12 13 2.3e-08 2e-06 28.1 1.1 1 23 719 741 719 741 0.99 13 13 0.34 30 5.5 3.4 1 19 746 764 746 769 0.89
Sequence Information
- Coding Sequence
- ATGGCATCGCCCCAGCCGCacccgcagccgcagccgggCCCGGAACCGGACCAGGAGTCGGAAATCCCGCCCCAGCCGGCGGGCCACGGAAAAGTGGATGCCGTCGATGCCGCGGATGCCGTGGATCGCGTATGCCGTGTCTGCCTTAGAGACGCCTCCGTGGAAGGAAACCTGCACTTCATCTTTGCCGAAGCGCCTGTGGAGCAGGGCGCCAACCTGGCCCGCATCCTGGACGAGTGCACGAAGCATCCGTGCGAGAGGCATGACGGGATGCCGCCACACATGTGCGGCTCTTGTGTGGAGGCAGCCCGCCAAGCCTACCGCTTCAAGAGGGACGCTGAGCGCTCCTACTGCTCCTTTGTGGCTCTCCTGGGCCGCTCACCACAACTGAAGGGTTCCGCCGCCGCCGTTGAGGTGGCCACCCAGACGGAGCAGGTGGCTCTGCTGTCGTGCGAGTTGTGTCACGACAAGTTCCTGAACAGCTTGGATCTCCGGCTGCATCGCAACCGAGTCCACCGGACGGCGAAagaggaaaaggacgaagagGAGCTCCTGCTCAAGTGCAAGTTCTGCGCGGAGACGTTTCCCCATCTCCGGCAGCTGCGCATCCACTTGGCGAAGAGCCACGACCAGACCGCTCGGCTCCAGTGCGGCCACTGCCCGCGTACCTTCACCCGGAGCGATCATATGCTGCGCCACATGCGCAACATGCACCCTCGCTCGCAGGACGAGGTCGCAGGTCTTCCGCCAAGCTGGCCGACGGCGGACCAAGATGAGGCGACCATGGAGAGTGCGGAAGGCGACGAACTGGTCGCAGCCGAGGTCCTGCTCAACGAAGAAGTCGACGACCAGGACGTTGGAGCTGCCCTTGAGTGCAATACAAACCCCATTTCCAGCAACGAGGAAGAGGACGATGACAATGACGAGGCCAAGCAGGCTTTGTGGCTGCACATTAAGCCGGAGCCCTGTCTCGAGGCCGAGGAGGTTGACCTCGTCGCCCAACTCAGCCTCGAAAAAAAGCGCCGCCGCAGAGAAAGGGGCATGGCCCCGGCCCCTGCCCAGGCCGAAGCCCCCCACGAAGCCCTCGTTAAGAGCGAACCCAGCGGCGACTCGCAGATGAGCATCAAAGTGGAGCGGGCGGGAGATGAAGATGCttttatgggcggcgaggacTTTCTGGAGCATCTGCGCGCTGCCGGGGAACTGCCGCTCAGCGACGATGAGCAGTTTCTGAACTACGTGGAAGAGGAAAGCGGCctggacgacgacgacgacgacgatgaggaggaggatgaaGGCGACGGagaggacgacgacgacgagcaGAGTCGGGGCTTCAAGCTGAAGCAGGGACCGCCAAAGGGCGCCGGCGGACGATTGGGGGGGAAAAAGTCGAAGCGACGTCGCCGCCGCAAAAAAGAGGGCTCGCCCACATCCAATCCCGAGAACCGGTGCGAGGTGTGCCAGCGCACCTTTTCGCGCCACTGCCACTTGCTGCGCCACAAGCTGTCGCATCTGGAGAAGAAGCCTCACAACTGCCCCCACTGTCCAAAGGCGTTTGCGCGCAGCGATCACCTGAAAGCCCACGTCCAGAGCCTGCACAGCAACAAGGAACACAAGTGCAGTCTCTGCGAGGCGGCGTTCGCCCGCCCCGACGCTCTCGAGCGGCACAAGCTGAGCAAGCACAACGGCGAGGGCCTGGAGCCCGGCAGCGAACTGAAGATGCAGCTGGCCGAGCACACCTGCGAGTACTGTTCGAAGCGCTTCTCCAGCAAGACCTACCTGCGCAAGCACACCCTGCTCCACACCGATTTCCTCTACGCCTGCAAGAGCTGTGAGGAAACGTTTAGGGAGCGGTCGCAGCTGCGGGAGCACGAGAAGACCCACACCGGCCAGAGGAACTTCCTCTGCTGCATTTGTGGCGATAGCTTTGCCCGAAACGACTACCTCCGCGTCCACATGCGGCGCCACAACGGCGAGAAGCCCTACAAGTGCCGTTACTGCGTCAAGGCCTTTCCCCGGGCCACTGATCTCAAGGTCCACGAGCGGTACCACACGGGCACGAAGCCGAATCTGTGCAACACCTGCGGCAAGAGCTTCCACCGGGCCTACAACCTGACCATCCACATGCGCACCCACACCGGAGAGCGGCCCTACAAATGCGACCAGTGCCCCAAGAGCTTCACGCAGAGCAACGACCTCAAGGCGCACATCCGGCGGCACACGGGCGAGCGCTACAAGTGTCCGCACTGCGACGCCTACTTCCTGCAGCTGTACAACATGCGCAACCACTGCCTCAGTGCCCACAACAAGCACATCGAGACGAAGACGGGCCGCCTGCAGCGAACGGGTCTGCTGGACGAGAGCGGGCAGTCGCATCTCACCACAGTGGTGATGCCGCCGGCGCGCTACCCCGCCGCTGGGGATCCATCTGTCCAGCTGTCGGCCGCAATCGGAGCCGATAACTCTTCCACCTCGACCACCGTCATCCACTCTCCAGGCGCCTACCACAATAGCGGGGTCGCATCCGGGGTGTTGTCGGGTGCCTCTTCGGCGGCGGCGGGAAATACACTTGACGGATCCAGCTTTGCGCCGACGGCAGTCAATGCGGGCGCTCCGTTCAACACCTTTAACTTTCCTCCCGCCGTAATGGCGCATCTCATGTACAACCACGGCGGTGGCAGTCAGCACAGTCAGCACAGCCAGAGCGGCAGCGACACCGCCAAATAG
- Protein Sequence
- MASPQPHPQPQPGPEPDQESEIPPQPAGHGKVDAVDAADAVDRVCRVCLRDASVEGNLHFIFAEAPVEQGANLARILDECTKHPCERHDGMPPHMCGSCVEAARQAYRFKRDAERSYCSFVALLGRSPQLKGSAAAVEVATQTEQVALLSCELCHDKFLNSLDLRLHRNRVHRTAKEEKDEEELLLKCKFCAETFPHLRQLRIHLAKSHDQTARLQCGHCPRTFTRSDHMLRHMRNMHPRSQDEVAGLPPSWPTADQDEATMESAEGDELVAAEVLLNEEVDDQDVGAALECNTNPISSNEEEDDDNDEAKQALWLHIKPEPCLEAEEVDLVAQLSLEKKRRRRERGMAPAPAQAEAPHEALVKSEPSGDSQMSIKVERAGDEDAFMGGEDFLEHLRAAGELPLSDDEQFLNYVEEESGLDDDDDDDEEEDEGDGEDDDDEQSRGFKLKQGPPKGAGGRLGGKKSKRRRRRKKEGSPTSNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCSLCEAAFARPDALERHKLSKHNGEGLEPGSELKMQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFRERSQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDESGQSHLTTVVMPPARYPAAGDPSVQLSAAIGADNSSTSTTVIHSPGAYHNSGVASGVLSGASSAAAGNTLDGSSFAPTAVNAGAPFNTFNFPPAVMAHLMYNHGGGSQHSQHSQSGSDTAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00550377; iTF_00546094; iTF_00504119; iTF_00481668; iTF_00488150; iTF_00566222; iTF_00539093; iTF_00476059; iTF_00580105; iTF_00477464;
- 90% Identity
- iTF_00546094;
- 80% Identity
- -