Datr001152.1
Basic Information
- Insect
- Drosophila atripex
- Gene Symbol
- -
- Assembly
- GCA_035045925.1
- Location
- JAWNOP010000009.1:3933297-3936142[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 1.4e+02 3.2 1.7 2 23 140 162 139 162 0.94 2 13 0.00036 0.028 14.9 1.8 2 23 174 196 173 196 0.95 3 13 4.1e-06 0.00032 21.0 4.2 2 23 203 225 202 225 0.96 4 13 0.0094 0.73 10.4 9.0 2 23 465 486 465 486 0.97 5 13 1.7e-06 0.00013 22.2 2.9 1 23 492 515 492 515 0.95 6 13 0.00017 0.013 16.0 0.4 1 23 520 543 520 543 0.96 7 13 5.6e-05 0.0043 17.5 5.5 1 23 561 583 561 583 0.96 8 13 6.4e-05 0.0049 17.3 0.7 1 23 588 610 588 610 0.98 9 13 2.9e-05 0.0023 18.3 1.7 1 23 616 638 616 638 0.95 10 13 2.1e-05 0.0016 18.8 0.7 1 23 644 666 644 666 0.98 11 13 3e-07 2.3e-05 24.6 2.7 3 23 674 694 673 694 0.99 12 13 2.2e-08 1.7e-06 28.1 1.1 1 23 700 722 700 722 0.99 13 13 0.21 16 6.2 4.3 1 19 727 745 727 750 0.89
Sequence Information
- Coding Sequence
- ATGGCATCGCCCCATCCGCAGCCGGGCCCGGATCCGGAACAGGAGACGGGAATCCCGCCCCAACCGGCGGGGCACGGAAAAGTGGATGCCGTGGACCCGGATCGCGTATGCCGTGTCTGCCTTAGGGACGCCTCCCTGGACGGAGAGCTGCACTTCATCTTCGCTGAGGCGGCCGTGGAGCAGGACGCCAACCTGGCCCGCATCCTGGAGGAGTGCACAGTACATCCGTGCGAAAGGCAGGACGGGATGCCAGCGCACATGTGCGGTTCTTGTGCGGAGGCAGCGCGCAGCGCCTACCGTTTCAAGCGGGACGCGGAGCGCTCTTATTGCTCGCTGGTAGCACTCCTGGGGCGGTCTCCCCAAATCAAGGCTTCCGGCACCGAGGCGTCCACCCAGACGGAGCAGGTGGCCCTGCTGTCGTGCGAGTTGTGTCACGACAAGTTCTTGAACAGCATGGATCTTCGCCTGCACCGGAACCGTGTCCACCGGACGGCAAGGGAGGacaaggaggaggagctgaagTGCAAGTTCTGCCCGCAGAGCTTCCCCCATCTCCGGCAGCTGCGCATTCACCTAGCGAAGAGCCACGACCAGACCGCTCGCCTCCAGTGCGGCCACTGCCCGCGGACCTTCACCAGGAGCGACCAtatgctgcgccatatgcgcAACATGCACAACCGCTCGCAGGACGATCTTCCGTCAGCCTGGCCGTCGACGGACCACGATGAGACGACCATGGAGGATGGGGAAGGCGACGAACTGGTCGCCGCCGAGGTCCTGCTCAACGAGGAGGGCGATGACCACGAAGGTGCAGCTGCCCTAGAGTGCAATACCAACCCAATCTCCAgcaacgaggaggaggacgatgaCAACGACGAGGCCAAGCAGGCGCTATGGTTGCACATCAAGCCGGAGCCCTGCCTGGAGGCTGAGGAGGTCGACCTCGTCGCTCAACTGAACCTCGAGAAGAAGCGTCGGCGCCGGGAGAAAACTGTAGTACCACCCGAAGCTTCCGGGGAAGCCCATGTGAAGAGCGAACCCAGCGGAGACTCGCAGATGAGCATCAAGGTTGAGCGGGCGGGCGACGAAGATGCTTTCATGGGCGGGGAGGACTTCCTGGAGCATCTACGGGCCGCCGGGGAACTGCCGCTTAGCGACGACGACCAGTTCTACAACTACGTCGAAGAGGAGAGCTGTCTGgaagacgacgacgacgaggaggacgaggaaggcgatggtgatggtgatggcgatgatgacgacgacggGACGAGCCGAGGGTTCCGGCTGAAGCAGGAACCGTTGAAGGGCGTCGGCGGGCGTTTGGGGAAGAAGGGAAAGCGACGGCGCCGCCGCAAAAAAGAGGGCTCGCCCACCTCCAATCCGGAGAACCGGTGCGAGGTGTGCCAGCGCACCTTTTCGCGCCACTGCCACTTGCTGCGCCACAAGCTATCCCATCTGGAGAAGAAGCCCCACAACTGCCCGCACTGCCCGAAGGCGTTTGCGCGCAGCGATCATCTGAAGGCGCATGTCCAAAGCCTGCACAGCAACAAGGAACACAAGTGCAGTCTCTGCGAGGCGGCGTTCGCTCGTCCCGACGCCCTGGAACGGCACAAGCTGAGCAAGCACAACGGCGAGGGTCTGGAGCCGGGCAGCGAACTGAAGATGCAACTGGCGGAGCATACCTGCGAGTACTGTTCGAAGCGCTTCTCCAGCAAGACCTACCTGCGTAAGCACACCCTGCTCCACACCGATTTTCTGTACGCCTGTAAGAGCTGCGACGAAACGTTCCGGGAGCGAGCGCAGCTGCGGGAGCACGAGAAGACCCACACCGGGCAGAGGAACTTCCTTTGCTGCATTTGTGGCGATAGCTTTGCCCGAAACGACTACCTCCGCGTCCATATGCGGCGCCACAACGGCGAGAAGCCCTACAAGTGCCGATACTGCGTCAAGGCCTTCCCACGGGCCACCGATCTCAAGGTCCACGAGCGCTACCATACGGGCACCAAACCAAATCTTTGCAACACCTGCGGCAAGAGCTTCCACCGGGCCTACAACCTGACCATCCACATGCGCACCCACACCGGTGAACGGCCCTACAAGTGCGACCAGTGCCCCAAGAGCTTCACGCAGAGCAACGACCTTAAGGCGCACATCCGTCGGCATACGGGCGAGCGATACAAGTGTCCGCACTGCGACACCTACTTCCTGCAGCTATACAACATGCGCAACCACTGCCTCAGCGCCCATAACAAGCACATTGAGACGAAGACGGGTCGCCTCCAGAGAACGGGTCTGCTGGAAGAGAGCGGGCAGTCGCATCTCACTACGGTGGTGATGCCGCCAGCGCGCTATCCCGCCGGCTCTGATCCCCAGCTGTCGGCCGCAATGGGAGCCGATAactcctcctccaccaccgTCATCCACTCGCCAGGCGCGTATCAAAATAGTGGCGTTGCTACAGGGGGGGTACTGGCACCGGGAAACACTTCGTCGGCGGCGGCGGGAAATACTCTGGACGGGAACAGCTTCGCGCCAACGGCGGTGAATGCGAGCGCTCCGTTTGGCGCCTTCAACTTCCCTCCCGTCGTGATGGCGCATCTCATGTACAACCACGGCGGCAGCAGCCAGCACAGTCAGAGCGGCAGCGACACCGCCAAATAG
- Protein Sequence
- MASPHPQPGPDPEQETGIPPQPAGHGKVDAVDPDRVCRVCLRDASLDGELHFIFAEAAVEQDANLARILEECTVHPCERQDGMPAHMCGSCAEAARSAYRFKRDAERSYCSLVALLGRSPQIKASGTEASTQTEQVALLSCELCHDKFLNSMDLRLHRNRVHRTAREDKEEELKCKFCPQSFPHLRQLRIHLAKSHDQTARLQCGHCPRTFTRSDHMLRHMRNMHNRSQDDLPSAWPSTDHDETTMEDGEGDELVAAEVLLNEEGDDHEGAAALECNTNPISSNEEEDDDNDEAKQALWLHIKPEPCLEAEEVDLVAQLNLEKKRRRREKTVVPPEASGEAHVKSEPSGDSQMSIKVERAGDEDAFMGGEDFLEHLRAAGELPLSDDDQFYNYVEEESCLEDDDDEEDEEGDGDGDGDDDDDGTSRGFRLKQEPLKGVGGRLGKKGKRRRRRKKEGSPTSNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCSLCEAAFARPDALERHKLSKHNGEGLEPGSELKMQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCDETFRERAQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDTYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLEESGQSHLTTVVMPPARYPAGSDPQLSAAMGADNSSSTTVIHSPGAYQNSGVATGGVLAPGNTSSAAAGNTLDGNSFAPTAVNASAPFGAFNFPPVVMAHLMYNHGGSSQHSQSGSDTAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615033;
- 90% Identity
- iTF_00550377;
- 80% Identity
- -