Derc003892.1
Basic Information
- Insect
- Drosophila ercepeae
- Gene Symbol
- -
- Assembly
- GCA_018150545.1
- Location
- JAECWL010000174.1:318207-321113[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.4 3.1e+02 2.0 1.6 2 23 146 168 145 168 0.93 2 13 0.0031 0.21 11.9 1.5 2 23 183 205 182 205 0.95 3 13 4e-06 0.00028 21.0 4.2 2 23 212 234 211 234 0.96 4 13 0.0091 0.63 10.4 9.0 2 23 479 500 479 500 0.97 5 13 1.6e-06 0.00011 22.2 2.9 1 23 506 529 506 529 0.95 6 13 0.00016 0.011 15.9 0.4 1 23 534 557 534 557 0.96 7 13 5.4e-05 0.0038 17.4 5.5 1 23 575 597 575 597 0.96 8 13 7.7e-05 0.0054 16.9 1.1 1 23 602 624 602 624 0.98 9 13 2.8e-05 0.002 18.3 1.7 1 23 630 652 630 652 0.95 10 13 2e-05 0.0014 18.8 0.7 1 23 658 680 658 680 0.98 11 13 2.9e-07 2.1e-05 24.5 2.7 3 23 688 708 687 708 0.99 12 13 2.2e-08 1.5e-06 28.1 1.1 1 23 714 736 714 736 0.99 13 13 0.33 23 5.5 3.4 1 19 741 759 741 764 0.89
Sequence Information
- Coding Sequence
- ATGGCATCGCCCCACCCGCAGCCGCAGCCGGGCCCGGAACCGGACCAGGAGTCGGAAATCCCGCCCCAGCCGGCGGGCCACGGAAAAGTGGATGCCATGGATGCCTTGGATGCCGTGGATCGCGTATGCCGTGTCTGCCTTAGAGACGCCTCTGTGGAAGGAAACCTGCACTTCATCTTTGCCGAAGCGCCCGTGGAGCAGGGCGCCAACCTGGCCCGCATCCTGGACGAGTGCACGAAGCATCCGTGCGAGAGGCATGACGGGATGCCACCACACATGTGCGGCTCTTGTGTGGAGGCAGCCCGCCAAGCCTACCGCTTCAAGAGGGACGCTGAGCGCTCCTACTGCTCCTTTGTGGCTCTCCTGGGCAGCTCACCGCAACTGAAGGCTTCCGCCGTTGAGGTGGCCACCCAGACGGAGCAGGTGGCGCTGCTGTCGTGCGAGCTGTGTCACGACAAGTTCCTGAACAGCTTGGATCTCCGGCTGCATCGCAACCGAGTCCACCGGACGGCGAAAGAGGAAAAGGACGAGGAGGAGCTCCTGCTCAAGTGCAAGTTTTGCGCGGAGACGTTTCCCCATCTCCGGCAGCTGCGCATTCACTTGGCGAAGAGCCACGACCAGACCTCTCGGCTCCAGTGCGGCCACTGCCCGCGTACCTTTACCCGGAGCGACCATATGCTGCGCCATATGCGCAACATGCACCCTCGCTCGCAGGACGAGGTCGCAGGTCTTCTGCCAACCTGGCCGTCGGCGGACCACGATGAGGCGACCATGGAAGGGGCGGAAGGCGACGAACTGGTCGCAGCCGAGGTCCTGCTCAACGAGGAAGACGATGACCAGGACGTTGGCGCTGCTCTTGAGTGCAATACAAACCCCATTTCCAGCAACGAGGAGGAGGACGATGACAACGACGAGGCCAAGCAGGCTTTGTGGCTCCACATCAAGCCGGAGCCCTGTCTCGAGGCCGAGGAGGTGGACCTCGTCGCCCAACTCAGCCTCGAGAAGAAGCGCCGCCGAAGAGAAAGGGCTATGGCCCCGGCCCCTGCCCAGGCCGAAGCCCCCCACGAAGCCCTCGTTAAGAGCGAACCCAGCGGCGACTCGCAGATGAGCATCAAAGTGGAGCGGGCGGGAGATGAAGATGCTTTCATGGGCGGCGAGGACTTCCTGGAGCATCTGCGCGCTGCCGGGGAGCTGCCGCTCAGCGACGACGAGCAGTTTCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGAGTCGGAGCTTCAAGCTGAAGCAGGGACCGGCAAAGGGCGCCGGCGGCCGGTTGGGGAAAAAGTCGAAGCGACGTCGCCGCCGCAAAAAAGAGGGCTCGCCCACATCCAATCCCGAGAACCGGTGCGAGGTGTGCCAGCGCACCTTTTCGCGCCACTGCCACTTGCTGCGCCACAAGCTCTCGCATTTGGAGAAGAAGCCTCACAACTGCCCCCACTGTCCGAAGGCGTTTGCGCGCAGCGATCACCTGAAAGCCCACGTCCAGAGCCTGCACAGCAACAAGGAGCACAAGTGCAGTCTCTGCGAGGCGGCGTTCGCTCGCCCCGACGCTCTCGAGCGGCACAAGCTGAGCAAGCACAACGGCGAGGGCCTGGAGCCCGGCAGCGAACTGAAGATGCAGCTGGCCGAGCACACCTGCGAGTACTGTTCGAAGCGCTTCTCAAGTAAGACCTACCTGCGCAAGCACACCCTGCTCCACACCGATTTCCTCTACGCCTGCAAGAGCTGTGAGGAAACGTTTAGGGAGCGGTCGCAGCTGCGGGAGCACGAGAAGACCCACACCGGCCAGAGGAACTTCCTCTGCTGCATTTGTGGCGATAGCTTTGCCCGAAACGACTACCTCCGCGTCCACATGCGGCGCCACAACGGCGAGAAGCCCTACAAGTGCCGTTACTGCGTCAAGGCCTTTCCCCGGGCCACTGATCTCAAGGTCCACGAGCGGTACCACACGGGCACCAAGCCGAATCTGTGCAACACCTGCGGTAAAAGCTTCCACCGGGCCTACAACCTGACCATCCACATGCGCACCCACACCGGAGAGCGGCCCTACAAGTGCGACCAGTGCCCCAAGAGCTTCACGCAGAGCAACGACCTCAAGGCGCACATCCGGCGGCACACAGGCGAGCGCTACAAGTGCCCGCACTGCGACGCCTACTTCCTGCAGCTGTACAACATGCGCAACCACTGCCTCAGCGCCCACAACAAGCACATCGAGACGAAGACGGGCCGCCTGCAGCGAACGGGTCTGCTGGACGAGAGCGGGCAGTCGCATCTCACCACAGTGGTGATGCCGCCTGCGCGCTACCCCGCCGCTGGGGATCCATCTGTCCAGCTGTCGGCCGCCATCGGAGCCGATAACTCTTCCACCTCGACCACCGTCATCCACTCGCCAGGCGCCTACCACAATAGCGGGGTCGCATCCGGGGTGTTGTCTGGTTCTGCGAATGCCTCTTCGGCGGCGGCGGGAAATACACTGGACGGCTCCAGCTTCGCGCCGACGGCAGTCAATGCGGGCGCTCCGTTTAACACCTTTAACTTTCCTCCCGCCGTAATGGCGCATCTCATGTACAACCACGGCGGTGGAAGTCAGCACAGTCAGCACAGCCAGAGCGGCAGCGACACCGCCAAATAG
- Protein Sequence
- MASPHPQPQPGPEPDQESEIPPQPAGHGKVDAMDALDAVDRVCRVCLRDASVEGNLHFIFAEAPVEQGANLARILDECTKHPCERHDGMPPHMCGSCVEAARQAYRFKRDAERSYCSFVALLGSSPQLKASAVEVATQTEQVALLSCELCHDKFLNSLDLRLHRNRVHRTAKEEKDEEELLLKCKFCAETFPHLRQLRIHLAKSHDQTSRLQCGHCPRTFTRSDHMLRHMRNMHPRSQDEVAGLLPTWPSADHDEATMEGAEGDELVAAEVLLNEEDDDQDVGAALECNTNPISSNEEEDDDNDEAKQALWLHIKPEPCLEAEEVDLVAQLSLEKKRRRRERAMAPAPAQAEAPHEALVKSEPSGDSQMSIKVERAGDEDAFMGGEDFLEHLRAAGELPLSDDEQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSRSFKLKQGPAKGAGGRLGKKSKRRRRRKKEGSPTSNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCSLCEAAFARPDALERHKLSKHNGEGLEPGSELKMQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFRERSQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDESGQSHLTTVVMPPARYPAAGDPSVQLSAAIGADNSSTSTTVIHSPGAYHNSGVASGVLSGSANASSAAAGNTLDGSSFAPTAVNAGAPFNTFNFPPAVMAHLMYNHGGGSQHSQHSQSGSDTAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615033;
- 90% Identity
- iTF_00546094;
- 80% Identity
- -