Dmer004998.1
Basic Information
- Insect
- Drosophila merina
- Gene Symbol
- -
- Assembly
- GCA_035047645.1
- Location
- JAWNPH010000030.1:735769-738679[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.5 4.1e+02 2.0 1.6 2 23 146 168 145 168 0.93 2 13 0.0031 0.29 11.9 1.5 2 23 183 205 182 205 0.95 3 13 4e-06 0.00037 21.0 4.2 2 23 212 234 211 234 0.96 4 13 0.0093 0.85 10.4 9.0 2 23 480 501 480 501 0.97 5 13 1.7e-06 0.00015 22.2 2.9 1 23 507 530 507 530 0.95 6 13 0.00016 0.015 15.9 0.4 1 23 535 558 535 558 0.96 7 13 5.5e-05 0.005 17.4 5.5 1 23 576 598 576 598 0.96 8 13 7.9e-05 0.0072 16.9 1.1 1 23 603 625 603 625 0.98 9 13 2.9e-05 0.0026 18.3 1.7 1 23 631 653 631 653 0.95 10 13 2.1e-05 0.0019 18.8 0.7 1 23 659 681 659 681 0.98 11 13 3e-07 2.7e-05 24.5 2.7 3 23 689 709 688 709 0.99 12 13 2.2e-08 2e-06 28.1 1.1 1 23 715 737 715 737 0.99 13 13 0.33 31 5.5 3.4 1 19 742 760 742 765 0.89
Sequence Information
- Coding Sequence
- ATGGCATCGCCCCACCCGCAGCCGCAGCCGGGCCCGGAACCGGACCAGGAGTCGGAAATCCCGCCCCAGCCGGCGGGCCACGGAAAAGTGGATGCCATGGATGCCTTGGATGCCGTGGATCGCGTATGCCGTGTCTGCCTTAGAGACGCCTCTGTGGAAGGAAACCTGCACTTCATCTTTGCCGAAGCGCCCGTGGAGCAGGGCGCCAACCTGGCCCGCATCCTGGACGAGTGCACGAAGAATCCGTGCGAGAGGCATGACGGGATGCCGCCACACATGTGCGGCTCTTGTGTGGAGGCAGCCCGCCAAGCCTACCGCTTCAAGAGGGACGCTGAGCGCTCCTACTGCTCCTTTGTGGCTCTCCTGGGCCGCTCACCGCAACTGAAGGCTTCCGCCGTTGAGGTGGCCACTCAGACGGAGCAGGTGGCGCTGCTGTCGTGCGAGCTGTGTCACGACAAGTTCCTGAACAGCTTGGATCTCCGGCTGCATCGCAACCGAGTCCACCGGACGgcgaaagaggaaaaggacgaggaggagctCCTGCTTAAGTGCAAATTTTGCGCGGAGACGTTTCCCCATCTCCGGCAGCTGCGCATCCACTTGGCGAAGAGCCACGACCAGACCGCTCGGCTCCAGTGCGGCCACTGCCCGCGTACCTTCACCCGGAGCGACCATATGCTGCGCCACATGCGCAACATGCACCCTCGCTCGCAGGACGAGGTCGCAAGTCTTCTGCCAACCTGGCCGTCGGCGGACCACGATGAGGCAACCATGGAAGGGGCGGAAGGCGACGAACTGGTCGCAGCCGAGGTCCTGCTCAACGAGGAAGACGATGACCAGGACGTTGGCGCTGCTCTTGAGTGCAATACAAACCCCATTTCCAGCAACGAGGAGGATGACGATGACAACGACGAGGCCAAGCAGGCTTTGTGGCTCCACATCAAGCCGGAGCCCTGTCTCGAGGCCGAGGAGGTGGACCTCGTCGCCCAACTCAGCCTCGAGAAGAAGCGCCGCCGAAGAGAAAGGGCCATGGCCCCGGCCCCTGCCCAGGCCGAAGCCCCCCACGAAGCCCTCGTTAAGAGCGAACCCAGCGGCGACTCGCAGATGAGCATCAAAGTGGAGCGGGCGGGAGATGAAGATGCTTTCATGGGCGGCGAGGACTTCCTGGAGCATCTGCGCGCTGCCGGGGAGCTGCCGCTCAGCGACGACGAGCAGTTTCTGAACTACGTGGAAGAGGAGAGCGGCctggacgacgacgacgacgacgaggatgaggaggaggatgaaGGCGACGGagaggacgacgacgacgagcaGAGTCGGAGCTTCAAGCTGAAGCAGGGACCGGCAAAGGGCGCCGGCGGCCGGTTGGGAAAAAAGTCGAAGCGACGTCGCCGCCGCAAAAAAGAGGGCTCGCCCACATCCAATCCCGAGAACCGGTGCGAGGTGTGCCAGCGCACCTTTTCGCGCCACTGCCACTTGCTGCGCCACAAGCTCTCGCATCTGGAGAAGAAGCCTCACAACTGCCCCCACTGTCCGAAGGCGTTTGCGCGCAGCGATCACCTGAAAGCCCACGTCCAGAGCCTGCACAGCAACAAGGAGCACAAGTGCAGTCTCTGCGAGGCGGCGTTCGCTCGCCCCGACGCTCTCGAGCGGCACAAGCTGAGCAAGCACAACGGCGAGGGCCTGGAGCCCGGCAGCGAACTGAAGATGCAGCTGGCCGAGCACACCTGCGAGTACTGTTCGAAGCGCTTCTCAAGCAAGACCTACCTGCGCAAGCACACCCTGCTCCACACCGATTTCCTCTACGCCTGCAAGAGCTGTGAGGAAACGTTTAGGGAGCGGTCGCAGCTGCGGGAGCACGAGAAGACCCACACCGGCCAGAGGAACTTCCTCTGCTGCATTTGTGGCGATAGCTTTGCCCGAAACGACTACCTCCGCGTCCACATGCGGCGCCACAACGGCGAGAAGCCCTACAAGTGCCGTTACTGCGTCAAGGCCTTTCCCCGGGCCACTGATCTCAAGGTCCACGAGCGGTACCACACGGGCACCAAGCCGAATCTGTGCAACACCTGCGGTAAGAGCTTCCACCGGGCCTACAACCTGACCATCCACATGCGCACCCACACCGGAGAGCGGCCCTACAAGTGCGACCAGTGCCCCAAGAGCTTCACGCAGAGCAACGACCTCAAGGCGCACATCCGGCGGCACACAGGCGAGCGCTACAAGTGCCCGCACTGCGACGCCTACTTCCTGCAGCTGTACAACATGCGCAACCACTGCCTCAGCGCCCACAACAAGCACATCGAGACGAAGACGGGCCGCCTGCAGCGAACGGGTCTTCTGGACGAGAGCGGGCAGTCGCATCTCACCACAGTGGTGATGCCGCCTGCGCGCTACCCCGCCGCTGGGGATCCATCTGTCCAGCTGTCGGCCGCCATCGGAGCCGATAACTCTTCCACCTCGACCACCGTCATCCACTCGCCAGGCGCCTACCACAATAGCGGGGTCGCATCCGGGGTGTTGTCTGGTTCTGCGAATGCCTCTTCGGCGGCGGCGGGAAATACACTGGACGGCTCCAGCTTCGCGCCGACGGCAGTCAATGCGGGCGCTCCGTTTAACACCTTCAACTTTCCTCCCGCCGTAATGGCGCATCTCATGTACAACCACGGCGGTGGAAGTCAGCACAGTCAGCACAGCCAGAGCGGCAGCGACACCGCCAAATAG
- Protein Sequence
- MASPHPQPQPGPEPDQESEIPPQPAGHGKVDAMDALDAVDRVCRVCLRDASVEGNLHFIFAEAPVEQGANLARILDECTKNPCERHDGMPPHMCGSCVEAARQAYRFKRDAERSYCSFVALLGRSPQLKASAVEVATQTEQVALLSCELCHDKFLNSLDLRLHRNRVHRTAKEEKDEEELLLKCKFCAETFPHLRQLRIHLAKSHDQTARLQCGHCPRTFTRSDHMLRHMRNMHPRSQDEVASLLPTWPSADHDEATMEGAEGDELVAAEVLLNEEDDDQDVGAALECNTNPISSNEEDDDDNDEAKQALWLHIKPEPCLEAEEVDLVAQLSLEKKRRRRERAMAPAPAQAEAPHEALVKSEPSGDSQMSIKVERAGDEDAFMGGEDFLEHLRAAGELPLSDDEQFLNYVEEESGLDDDDDDEDEEEDEGDGEDDDDEQSRSFKLKQGPAKGAGGRLGKKSKRRRRRKKEGSPTSNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCSLCEAAFARPDALERHKLSKHNGEGLEPGSELKMQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFRERSQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDESGQSHLTTVVMPPARYPAAGDPSVQLSAAIGADNSSTSTTVIHSPGAYHNSGVASGVLSGSANASSAAAGNTLDGSSFAPTAVNAGAPFNTFNFPPAVMAHLMYNHGGGSQHSQHSQSGSDTAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615033;
- 90% Identity
- iTF_00504119; iTF_00615033;
- 80% Identity
- -