Dpse004339.1
Basic Information
- Insect
- Drosophila pseudoananassae
- Gene Symbol
- -
- Assembly
- GCA_018153035.1
- Location
- JAECXR010000035.1:1202391-1205212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7 1.2e+02 3.2 1.3 2 23 140 162 139 162 0.94 2 13 0.00034 0.024 14.9 1.8 2 23 174 196 173 196 0.95 3 13 3.8e-06 0.00027 21.0 4.2 2 23 203 225 202 225 0.96 4 13 0.0087 0.62 10.5 9.0 2 23 461 482 461 482 0.97 5 13 1.6e-06 0.00011 22.2 2.9 1 23 488 511 488 511 0.95 6 13 6.8e-05 0.0048 17.1 0.4 1 23 516 539 516 539 0.96 7 13 5.1e-05 0.0037 17.5 5.5 1 23 557 579 557 579 0.96 8 13 0.00013 0.0091 16.2 0.5 1 23 584 606 584 606 0.98 9 13 2.7e-05 0.0019 18.3 1.7 1 23 612 634 612 634 0.95 10 13 1.9e-05 0.0014 18.8 0.7 1 23 640 662 640 662 0.98 11 13 2.8e-07 2e-05 24.6 2.7 3 23 670 690 669 690 0.99 12 13 2.1e-08 1.5e-06 28.2 1.1 1 23 696 718 696 718 0.99 13 13 0.15 11 6.5 4.6 1 23 723 746 723 746 0.90
Sequence Information
- Coding Sequence
- ATGGCTTCGCCACATCCGCAGCCGGGCCCGGATCCGGAACAGGAGTCGGAAATCCCGCCCCAGCCGGCGGGGTACGAAAAAGTGGATGCCGTGGACCCGGATCGCGTATGCCGTGTCTGCCTTAGAGACGCCAGCCAGGAGGGAGAGTTGCACTTCATCTTCGCCGAGGTGGCCGTGGAACAGGACGCAAACCTGGCCCGCATCCTAGAGGAGTGCACAGTTCATCCGTGCGAGAGGCAGGACGGGATGCCATCGCACATGTGCGCTTCATGTGTGGAGGCAGCACGCAATGCCTACCGTTTCAAACGGGACGCCGAACGCTCTTATTGCTCACTGGTAGCTCTCCTGGGGCGTTCTCCCCAGTTAAAGGCTTCCGGCGCCGAGGCGTCCACCCAAACGGAGCAGGTGGCCCTTTTGTCGTGCGAGCTGTGTCACGACAAGTTCCTGAACAGCATAGATCTCCGGTTGCACCGAAACCGTGTCCACCGGTCCGCGAAAGAGGACAAGGAGGAGGAGCTGAAGTGCAAGTTCTGCCCTCAGAGCTTCCCCCATCTCCGGCAGCTGCGCATCCACCTGGCGAAGAGCCACGACCAGACAGCTCGGCTCCAGTGCGGCCACTGCCCGCGGACGTTTACCCGGAGCGACCATATGTTGCGCCACATGCGCAACATGCACAATCGCTCGCAGGACGATCTTTCAGCAACCTGGCCGTCGGCGGACCACGATGAGACGACTATGGAAGGTGCGGAAGGCGACGAACTGGTCGCGGCTGAGGTCCTGCTTAACGAGGAGGGCGATGACCACGAAGGCGGAGCTGCCCTAGAGTGCAATACAAACCCAATTTCCAGCAACGAAGAGGAGGACGATGACAACGACGAGGCCAAACAGGCTCTATGGTTGAACATCAAGCCGGAGCCCTGTCTGGAGGCTGAGGAGGTCGACCTGGTCGCCCAACTGAACCTCGAGAAGAAGCGGCGTCGACGGGACAAGGCTGTCGTCCCAGCCGAAGCCTCTGGCGACGCCCATGTGAAGAGCGAACCCAGTGGTGATTCGCAGATGAGCATCAAAGTGGAGCGGGGTGGAGACGATGATGCTTTCATGGGCAGTGAGGACTTCCTGGAGCATCTGCGAGCTGCTGGGGAACTGCCGCTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGGGGCGAGGATTCCGGTTGAAGCAGGAACCTCTGAAGGGCGCCGGTGGGCGTTTGGGGAAAAAGGGAAAGCGGCGGCGTCGCCGCAAAAAAGAGGGTTCTCCCACATCCAATCCGGAGAACCGGTGCGAGGTGTGCCAGCGCACCTTCTCGCGCCACTGCCACTTGCTGCGCCATAAGCTGTCGCATCTGGAGAAGAAACCTCACAATTGCCCGCACTGCCCGAAGGCGTTTGCGCGCAGCGATCACCTGAAAGCGCACGTCCAGAGCCTGCACAGCAACAAGGAGCACAAGTGCAGTCTCTGCGATGCGGCGTTTGCTCGCCCGGAAGCCTTGGAGCGGCACAAGCTGAGCAAGCATAATGGGGAGGGCCTGGAGCCCGGCAGCGAACTGAAGATGCAACTGGCGGAGCACACCTGCGAGTACTGTTCGAAGCGCTTCTCCAGCAAGACCTACCTGCGTAAGCACACCCTGCTTCACACCGATTTCCTGTACGCCTGCAAGAGCTGCGACGAAACGTTCCGGGAGCGGGCGCTGCTGCGGGAGCACGAGAAGACCCACACCGGGCAGAGGAACTTCCTGTGCTGCATTTGTGGCGATAGCTTTGCCAGAAACGACTACCTCCGCGTCCATATGCGGCGCCACAATGGCGAGAAGCCCTACAAGTGCCGTTACTGCGTCAAGGCCTTCCCCCGGGCCACCGATCTCAAGGTCCACGAGCGCTACCACACGGGCACCAAGCCAAATCTGTGCAACACCTGCGGCAAGAGCTTCCACCGGGCCTACAACCTGACCATTCACATGCGCACCCACACCGGTGAACGGCCCTACAAGTGCGACCAGTGCCCCAAGAGCTTCACGCAAAGCAACGACCTCAAGGCGCACATCCGCCGGCATACGGGCGAGCGCTACAAGTGCCCGCACTGCGACACATACTTCCTGCAGCTGTACAACATGCGCAATCACTGCCTCACCGCCCACAACAAGCACATCGAGACGAAGACGGGTCGCCTCCAGCGAACGGGTCTGCTGGAAGAAAGCGCCCAGTCGCATCTCACTACGGTGGTGATGCCGCCGGCTCGCTATCCCGCCGGTTCTGATCCCCAGCTATCGGCCGCAATCGGAGCAGATAACTCCTCCTCCACCACAGTCATCCACTCGCCGGGCGCTTACCAGAACAGTGGCGTCGCTACAGGTGTACTGGCTCCGGGTAACCCTTCGTCAACGGCGGGAAATACCCTGGACGGGAATAGCTTCGCTCCGTCGAGTGCTCCGTTTGGCGCCTTCAACTTCCCTCCCGTCGTAATGGCACATCTCATGTACAACCACGGCGGTAGCAGTCAGCACAGCCAGAGCGGCAGCGACACCGCCAAATAG
- Protein Sequence
- MASPHPQPGPDPEQESEIPPQPAGYEKVDAVDPDRVCRVCLRDASQEGELHFIFAEVAVEQDANLARILEECTVHPCERQDGMPSHMCASCVEAARNAYRFKRDAERSYCSLVALLGRSPQLKASGAEASTQTEQVALLSCELCHDKFLNSIDLRLHRNRVHRSAKEDKEEELKCKFCPQSFPHLRQLRIHLAKSHDQTARLQCGHCPRTFTRSDHMLRHMRNMHNRSQDDLSATWPSADHDETTMEGAEGDELVAAEVLLNEEGDDHEGGAALECNTNPISSNEEEDDDNDEAKQALWLNIKPEPCLEAEEVDLVAQLNLEKKRRRRDKAVVPAEASGDAHVKSEPSGDSQMSIKVERGGDDDAFMGSEDFLEHLRAAGELPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGRGFRLKQEPLKGAGGRLGKKGKRRRRRKKEGSPTSNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCSLCDAAFARPEALERHKLSKHNGEGLEPGSELKMQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCDETFRERALLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDTYFLQLYNMRNHCLTAHNKHIETKTGRLQRTGLLEESAQSHLTTVVMPPARYPAGSDPQLSAAIGADNSSSTTVIHSPGAYQNSGVATGVLAPGNPSSTAGNTLDGNSFAPSSAPFGAFNFPPVVMAHLMYNHGGSSQHSQSGSDTAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615033;
- 90% Identity
- iTF_00488150;
- 80% Identity
- -