Dsub010038.1
Basic Information
- Insect
- Drosophila subsilvestris
- Gene Symbol
- MBD2
- Assembly
- GCA_035043285.1
- Location
- JAWNNB010001730.1:2417321-2418943[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-15 6.4e-12 45.0 0.1 1 48 9 66 9 82 0.96 2 2 6.8e-06 0.019 14.7 0.0 26 76 172 233 159 234 0.89
Sequence Information
- Coding Sequence
- ATGCAGATGAATCCAAGTGTAACGATTGAACGCAAACGCGTCGACTGCAGTGTCCTGCCCAAGGGCTGGCAACGGGATGAAGGACGAAagtcgggcagcagcagcagtagcaccaccaccagcggcagcaacaacaacaataaagtgGATGTTTTCTACTACAGTCAAACAGGAAAAAGAGTTGAAGGAAAGCAGCAGGGGGGCGAGGTATTTGACATTGGAAGCTTTGATTTCCAGTCCgggaagctgcagcagcgccagctACCCTCACCATCGATATCGCTGTACCGCTGCAGTGCCATGCCCCTGCCAATTGGCGCCGGAGgctctggagctggagcatCATTGAAACGGAAATATGCCAGGGCCCAGGCAAacagcggcggtggcggcacagcagcatccacggcatcgacagcgacagcagcaccaccaacaacagccGGCGCTTCATCCTCCACAGCGGCTGGCGGAACGTCCACCAATCtgcgccagcaacagcagatggAACTCAGCCGAGCCCTACGCACAGATGTCTCGCTGGTGCCGCCCATTCGACAGACTGCCTCCATATTCAAGCAACCGGTGACGGCTATTCGGAACCACAGCCAGGATCCCAGCAAGGTGAAGCACGATGCTAAGCATGGGGCGCAGGAGAAGCCCAAACAGTTGTTCTGGGAGAAGAGGCTGGAGCGACTGCGTGCCTGTCACGACAATGGCGACGAGCTGGACGATATATCACTGCCCAAGACCATACGCACTGTTGGACCAAATGTCAACGAACAGACAGTCCTCCAGTCGGTGGCCACAGCCCTGCACATGCTCAATGCTGGAGTGCATGGCCAGAGCTCGACTAAAGCCGAGCTGACCAAAAATGCGATGGCATTCATGAACCCAGAACAGCCGCTCATGCATGCGGTAATCATTTCCGAGGAGGATATACGAAAGCAGGAGGATCGCGTCGGTGTGGCGCGTCGAAAGCTACAGGATGCACTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDCSVLPKGWQRDEGRKSGSSSSSTTTSGSNNNNKVDVFYYSQTGKRVEGKQQGGEVFDIGSFDFQSGKLQQRQLPSPSISLYRCSAMPLPIGAGGSGAGASLKRKYARAQANSGGGGTAASTASTATAAPPTTAGASSSTAAGGTSTNLRQQQQMELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHSQDPSKVKHDAKHGAQEKPKQLFWEKRLERLRACHDNGDELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEEDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00536035; iTF_00601046; iTF_00514879; iTF_00517700; iTF_00473767; iTF_00480851; iTF_00574803; iTF_00580720; iTF_00471605; iTF_00487287; iTF_00474492; iTF_00611342; iTF_00563900;
- 90% Identity
- iTF_00563900;
- 80% Identity
- -