g3081.t1
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- MBD2
- Assembly
- GCA_009870125.2
- Location
- CM020868.1:24925895-24927505[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-18 1.6e-14 53.4 0.1 1 48 9 70 9 86 0.96 2 2 2.1e-05 0.047 13.5 0.0 26 76 181 242 168 243 0.89
Sequence Information
- Coding Sequence
- ATGCAGATGAATCCGAGTGTAACAATTGAAAGAAAACGCGTCGACTGCAGTGTCCTGCCAAAGGGCTGGCAACGCGATGAGGGGCGAAAGTcgggcagcagcagttgcgCCACtaccaccaacagcagcagcatcagcagcaacaacaacaataaagtGGATGTTTTTTACTACAGTCCAACAGGAAAAAGAGTTGAAGGAAAGCAGCAGGGGGGCGAGGTATTTGACATTGGAAGCTTTGATTTCCAGTCCgggaagctgcagcagcgccagctgcCTTCACCATCGATATCGCTGTACCGCTGCAGTGCCATGCCCCTGCCAATTGGCGCCGGtggcgctggagctggagcttcACTAAAACGGAAATATGCCAGGGCCCAGGcaaacagcggcagcggcggcggcggtatAGCAGCATACTCATCATCGCCAGCGAcagtgacagcagcagcaacggcaacaacagcaggcgcCTCATCCTCCACTGCGGCTGGTGGATCGACCAGCAATCTgcgccagcaacagcagatggAACTCAGTCGAGCTCTACGCACAGATGTCTCGCTGGTGCCGCCCATACGACAGACTGCCTCCATTTTCAAGCAACCGGTGACACCGATTGGTAACCATACCCAGGATCCCAGCAAGGTGAAGCACGATTCCAAGCATGGGGCCCAGGAGAAGCCCAAACAATTGTTCTGGGAGAAGAGGCTGGAGCGACTGCGTGCATGCCACGATAATGGTGAGGAGCTGGACGATATATCACTGCCCAAGACTATACGCACTGTCGGCCCAAATGTCGACGAACAGACAGTCCTCCAGTCGGTGGCCACAGCCCTGCACATGCTCAATGCCGGTGTACATGGCCAGAGCTCGACCAAGGCCGAACTGACCAAGAATGCCATGGCATTCATGAACCCAGAACAGCCGCTAATGCATGCGGTTATCATCTCCGAGGAGGACATACGAAAGCAGGAGGATCGTGTCGGTGTGGCGCGGCGAAAGTTACAGGATGCACTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDCSVLPKGWQRDEGRKSGSSSCATTTNSSSISSNNNNKVDVFYYSPTGKRVEGKQQGGEVFDIGSFDFQSGKLQQRQLPSPSISLYRCSAMPLPIGAGGAGAGASLKRKYARAQANSGSGGGGIAAYSSSPATVTAAATATTAGASSSTAAGGSTSNLRQQQQMELSRALRTDVSLVPPIRQTASIFKQPVTPIGNHTQDPSKVKHDSKHGAQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVDEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEEDIRKQEDRVGVARRKLQDALKT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603337;
- 90% Identity
- iTF_00563900;
- 80% Identity
- -