Dbif005943.1
Basic Information
- Insect
- Drosophila bifasciata
- Gene Symbol
- MBD2
- Assembly
- GCA_009664405.1
- Location
- CM019044.1:40558621-40560267[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-18 1.1e-14 53.5 0.1 1 48 9 70 9 86 0.96 2 2 4.8e-06 0.014 14.7 0.0 26 76 179 240 165 241 0.88
Sequence Information
- Coding Sequence
- ATGCAGATGAATCCGAGTGTAACGATTGAACGCAAACGCGTCGACTGCAGTGTCCTGCCCAAGGGCTGGCAGCGGGATGAGGGGCGAAAGTcgggcagcagcggcagtagtagtaccaccaccaccacgaccagcggcagcaacaacaacaataaggtGGATGTTTTTTACTACAGTCCAACAGGAAAAAGAGTTGAAGGAAAGCAGCAGGGGGGCGAGGTATTTGACATTGGAAGCTTTGATTTCCAGTCCGggaagctgcagcagcgccagcTGCCCTCACCATCGATATCGCTGTACCGCTGCAGTGCCATGCCCCTGCCAATTGGCGCCGGAGGctctggagctggagctgcattgaaACGGAAATATGCCAGAGCCCAGGCAaacagcggcggcggcggcacagcAGCATCCACGGcatcgacagcagcagcagcggcagcggcagcaccaacaacagcaggcgCATCATCCTCCGCATCGGCTGGCGGAACGTCCACTAATCTgcgccagcaacagcagatggAACTCAGTCGAGCCCTGCGCACAGATGTCTCGCTGGTGCCGCCCATACGACAGACTGCCTCCATATTCAAGCAACCGGTGACGGCGATTCGGAACCACAGCCAGGATCCCGGCAAGGTGAAGCACGATGCAAAGCATGGGGCCCAGGAGAAGCCCAAGCAATTGTTCTGGGAGAAGAGGCTGGAGAGACTGCGCGCCTGTCACGACAATGGCGACGAGCTGGACGATATATCACTGCCCAAGACCATACGCACAGTCGGCCCAAATGTCAACGAACAGACGGTCCTCCAGTCGGTGGCCACAGCCCTGCACATGCTCAATGCTGGTGTACATGGCCAGAGCTCCACCAAGGCCGAACTGACCAAGAATGCGATGGCATTTATGAACCCCGAACAGCCGCTCATGCATGCAGTCATCATTTCCGAAGAGGATATACGCAAGCAGGAGGATCGTGTCGGTGTGGCGCGTCGAAAGCTACAGGATGCACTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDCSVLPKGWQRDEGRKSGSSGSSSTTTTTTSGSNNNNKVDVFYYSPTGKRVEGKQQGGEVFDIGSFDFQSGKLQQRQLPSPSISLYRCSAMPLPIGAGGSGAGAALKRKYARAQANSGGGGTAASTASTAAAAAAAAPTTAGASSSASAGGTSTNLRQQQQMELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHSQDPGKVKHDAKHGAQEKPKQLFWEKRLERLRACHDNGDELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEEDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603337;
- 90% Identity
- iTF_00563900;
- 80% Identity
- -