Dgua011098.1
Basic Information
- Insect
- Drosophila guanche
- Gene Symbol
- MBD2
- Assembly
- GCA_900245975.1
- Location
- NW:1681260-1683153[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-15 1.1e-11 43.7 0.2 1 48 9 73 9 75 0.97 2 2 5.8e-06 0.015 14.4 0.0 26 76 186 247 172 248 0.89
Sequence Information
- Coding Sequence
- ATGCAGATGAATCCAAGTGTTACGATTGAACGCAAACGCGTCGACTGCAGTGTCCTGCCCAAGGGCTGGCAACGGGATGAGGGCCGAAagtcgggcagcagcagcagtagcactAGCgctaccaccaccaccacgaccagcggcagcaacaacaacaacaataaagtgGATGTTTTTTACTACAGTCAAACAGGAAAAAGAGTTGaaggaaaacagcagcaggggggCGAGGTTTTTGACATTGGAAGCTTTGATTTCCAGTCCgggaagctgcagcagcgccagctgcCCTCACCATCGATCTCGCTGTATCGCTGCAGCGCCATGCCTCTGCCAATTGGTGCCGGCggcgctggagctggagcttcaCTTAAACGGAAATATGCCAGGGCTCAGGCAAACAGCAGCGTTGGcggcacaacagcagcatccacgCCATCGACAGctaccgcagcagcagcggcagcagcacaaccaacaacagcaggctCATCATCCTCCACCGCGGGTGGCGGAACGTCCAGCAATCtgcgccagcaacagcagatggAACTCAGTCGAGCCCTGCGCACAGATGTCTCGCTGGTGCCGCCCATACGACAGACTGCCTCCATATTTAAGCAACCGGTGACGGCGATTGGAAACCACAGCCAGGATCCCAGCAAGGTGAAGCACGATGCCAAGCATGGGGCCCAGGAGAAGCCCAAACAGTTGTTTTGGGAGAAGAGGCTGGAGCGACTGCGCGCTTGTCACGACAATGGCGAGGAGCTGGACGATATATCACTGCCCAAGACCATTCGCACTGTCGGCCCAAATGTCAACGAACAGACAGTCCTGCAGTCGGTAGCCACAGCCCTGCACATGCTCAATGCGGGTGTGCATGGCCAGAGCTCGACCAAGGCCGAACTCACCAAAAATGCGATGGCATTCATGAACCCCGAACAGCCGCTCATGCATGCAGTCATAATTTCCGAGGAGGACATACGCAAGCAGGAGGATCGCGTTGGTGTGGCGCGTCGAAAGCTACAGGATGCACTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDCSVLPKGWQRDEGRKSGSSSSSTSATTTTTTSGSNNNNNKVDVFYYSQTGKRVEGKQQQGGEVFDIGSFDFQSGKLQQRQLPSPSISLYRCSAMPLPIGAGGAGAGASLKRKYARAQANSSVGGTTAASTPSTATAAAAAAAQPTTAGSSSSTAGGGTSSNLRQQQQMELSRALRTDVSLVPPIRQTASIFKQPVTAIGNHSQDPSKVKHDAKHGAQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEEDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603337;
- 90% Identity
- iTF_00563900;
- 80% Identity
- -