Damb004588.1
Basic Information
- Insect
- Drosophila ambigua
- Gene Symbol
- MBD2
- Assembly
- GCA_018150905.1
- Location
- JAECWS010000100.1:10249415-10251044[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-16 9e-13 47.4 0.1 1 48 9 68 9 84 0.96 2 2 9.9e-06 0.025 13.9 0.0 27 76 178 238 173 239 0.91
Sequence Information
- Coding Sequence
- ATGCAGATGAATCCGAGTGTAACGATTGAACGCAAACGCGTCGACTGCAGTGTCCTGCCCAAGGGCTGGCAGCGGGACGAGGGACGAAAGTCGGGCAGCAGCAGCAGTAGCACCACCACCACGACCAGCGGCAGCAACAACAACAATAAAGTGGATGTTTTCTATTACAGTCAAACAGGAAAAAAACTTGAAGGAAAGCAGCAGGGGGGCGAGGTATTTGACATTGGAAGCTTTGATTTCCAGTCCGGGAAGCTGCAGCAGCGCCAGCTGCCCTCACCATCGATATCGCTGTACCGCTGCAGTGCCATGCCCCTGCCAATTGGCGCCGGAGGCGCTGGAGCTGGAGCTTCACTGAAACGGAAATATGCCAGGGCCCAGGCAAACAGCAGCGGTGGCGGCGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGAACTCAGTCGAGCCCTACGCACAGATGTCTCGCTGGTGCCGCCCATACGACAGACTGCCTCCATATTCAAGCAACCGGTGACGGCGATTCGGAACCACAGCCAGGATCCCAGCAAGGTGAAGCACGATGCAAAGCATGGGGCCCAGGAGAAGCCCAAACAGTTGTTCTGGGAGAAGAGGCTGGAGCGACTGCGTGCCTGTCACGACAATGGCGACGAGCTGGACGATATATCACTGCCCAAGACCATACGCACTGTCGGCCCAAATGTCAACGAACAAACAGTCCTCCAGTCGGTGGCCACGGCCCTGCACATGCTCAATGCTGGAGTGCATGGCCAGAGCTCGACCAAAGCCGAACTGACCAAGAATGCGATGGCATTCATGAACCCAGAACAGCCGCTCATGCATGCAGTCATCATTTCCGAGGAGGATATACGAAAGCAGGAGGATCGCGTCGGTGTGGCGCGTCGAAAGCTACAGGATGCACTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDCSVLPKGWQRDEGRKSGSSSSSTTTTTSGSNNNNKVDVFYYSQTGKKLEGKQQGGEVFDIGSFDFQSGKLQQRQLPSPSISLYRCSAMPLPIGAGGAGAGASLKRKYARAQANSSGGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHSQDPSKVKHDAKHGAQEKPKQLFWEKRLERLRACHDNGDELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEEDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603337;
- 90% Identity
- -
- 80% Identity
- -