Dobs011372.1
Basic Information
- Insect
- Drosophila obscura
- Gene Symbol
- MBD2
- Assembly
- GCA_018151105.1
- Location
- NW:9624871-9626778[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-16 1.7e-12 46.4 0.1 1 48 9 68 9 84 0.92 2 2 4.9e-06 0.014 14.7 0.0 26 76 175 236 162 237 0.89
Sequence Information
- Coding Sequence
- ATGCAGATGAATCCGAGTGTAACGATTGAACGCAAACGCGTCGACTGCAGTGTCCTGCCCAAGGGCTGGCAGCGGGACGAGGGACGAAAGTcgggaggcagcagcagtagcaccaccaccacgaccagcggcagcaacaacaacaataaagtGGATGTTTTCTATTACAGTCAAACAGGAAAAAAACTTGAAGGAAAGCAGCAGGGGGGCGAGGTATTTGACATTGGAAGCTTTGATTTCCAGTCCGggaagctgcagcagcgccagctgcCCTCACCATCGATATCGCTGTACCGCTGCAGTGCCATGCCCCTGCCAATTGGCGCCGGAggcgctggagctggagcttcACTGAAACGGAAATATGCCAGGGCCCAGGCAAACagcagcggtggcggcggcacagcagcatcaacgacagcgacaccagcagcggcagcaccaacaacagtaGGCGCATCATCCTCCACAGCGGCTGGCGGAACGTCCACTAATCTgcgccagcaacagcagatggAACTCAGTCGAGCCCTACGCACTGATGTCTCGCTGGTGCCGCCCATACGACAGACTGCCTCCATATTCAAGCAACCGGTGACGGCGATTCGGAACCACAGCCAGGATCCCAGCAAGGTGAAGCACGATGCCAAGCATGGGGCCCAGGAGAAGCCCAAACAGTTGTTCTGGGAGAAGAGGCTGGAGCGACTGCGTGCCTGTCACGACAATGGCGACGAGCTGGACGATATATCACTGCCCAAGACCATACGCACTGTCGGCCCAAATGTCAACGAACAGACAGTCCTCCAGTCGGTGGCCACAGCCCTGCACATGCTCAATGCTGGCGTGCATGGCCAGAGCTCGACCAAAGCCGAACTGACCAAGAATGCGATGGCATTCATGAACCCAGAACAGCCGCTCATGCATGCAGTCATCATTTCCGAGGAGGATATACGAAAGCAGGAGGATCGCGTCGGTGTGGCGCGTCGGAAGCTACAGGATGCACTCAAGACATga
- Protein Sequence
- MQMNPSVTIERKRVDCSVLPKGWQRDEGRKSGGSSSSTTTTTSGSNNNNKVDVFYYSQTGKKLEGKQQGGEVFDIGSFDFQSGKLQQRQLPSPSISLYRCSAMPLPIGAGGAGAGASLKRKYARAQANSSGGGGTAASTTATPAAAAPTTVGASSSTAAGGTSTNLRQQQQMELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHSQDPSKVKHDAKHGAQEKPKQLFWEKRLERLRACHDNGDELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEEDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603337;
- 90% Identity
- iTF_00514879; iTF_00536035; iTF_00517700; iTF_00603337; iTF_00611342; iTF_00574803; iTF_00580720; iTF_00471605; iTF_00473767; iTF_00480851; iTF_00601046; iTF_00487287;
- 80% Identity
- -