Dseg007542.1
Basic Information
- Insect
- Drosophila seguyi
- Gene Symbol
- -
- Assembly
- GCA_008042675.1
- Location
- VNJU01002422.1:7195-10965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.093 6.7 7.3 6.1 2 23 360 382 359 382 0.95 2 17 0.36 26 5.4 0.1 1 23 389 414 389 414 0.92 3 17 0.032 2.3 8.7 2.2 2 23 425 446 425 446 0.93 4 17 0.027 1.9 9.0 0.1 2 23 486 508 486 508 0.95 5 17 0.0049 0.36 11.3 0.6 3 23 516 536 514 536 0.95 6 17 0.023 1.6 9.2 0.1 1 23 544 567 544 567 0.98 7 17 0.0057 0.41 11.1 0.3 2 23 572 593 571 593 0.97 8 17 0.0002 0.014 15.7 0.4 1 22 641 662 641 665 0.91 9 17 0.33 24 5.6 1.4 3 21 672 690 672 691 0.90 10 17 0.074 5.4 7.6 0.3 1 23 710 735 710 735 0.95 11 17 0.046 3.3 8.2 1.5 2 23 753 775 752 775 0.93 12 17 0.0057 0.41 11.1 0.3 2 23 781 803 780 803 0.92 13 17 0.0047 0.34 11.4 0.3 2 23 807 829 806 829 0.95 14 17 7e-05 0.0051 17.1 0.6 1 23 835 857 835 857 0.97 15 17 0.0082 0.6 10.6 1.0 1 23 861 884 861 884 0.93 16 17 9.1e-06 0.00066 19.9 0.9 1 23 890 913 890 913 0.97 17 17 2.9e-05 0.0021 18.3 0.6 1 23 917 945 917 945 0.86
Sequence Information
- Coding Sequence
- ATGTCGGAAAACCAGAAAAACAATAGCTGCCTGCATTGTAGTGTTTTCAATACGAAATACCAGTACCAGGAGATCTTCGATGAGTTCGGCAAGGAGCTGGGCCTGCAGTCGCTGCTGGCCAAGCACTTCCAGTTGGATGTGGTGCCCGATCCCCGCCAGAGGCAGCTCCTGTGCGAGGTGTGCGTCAACATGCTCATCCGGCTGTTCGATATCGATGAATTGCAGCGCCAACAGGATGCGGCGAAGGCTAGGACCGAGGATTCAATCCCTGAAACCAAGGATCCAAGCCCTGAAACGTCCCAAGAAAGCGTTCATCCTGTCTCCCCGGTTTCAGTCAAGTCTGACGATAAGCCTGCGCCCGCTAAAGGCGCTTGTAATAAGGAAAAGATTACGAAGCCCGCAGTGGTTGCTTCATCTTCTCCTCCCACCAGGGAGCCAAGTGCCCGGATCAGCAAGAGAGTTCCGCCACCTCAGGTATTGCCTGCACCATCCAAACCGTCTGGGCGAGCCAGGGAGTCGATAAATCCCACCAGGGAAACAGCGCCCGCCAAGGAGGCATCGCCCGCCAAGGAAGCACCGCCTGCCAATGAAGCATCGCCAGCCAAGCCAAAGGACTCTGAACAGGAGCATATTAGTGTCCTTATACAAAACCTCCTCGACGAAGATGAGGCCTTGTGCGTGGAGGTGACAGACGAAGCTGAGCCCATATGTGAGGAAGTAGAAGCAATCGAGACTGCTCCCATACCAGAAGAGCCTCAAACCCGAAGGAAAATGGTCCTGTTGAACAAGAAAGCCGCGCGCCAGCCCAGTCTAGatgaagatatatatatatacgagcAAGAGGATATTTTGGTGTCCGCTGTGGAGAAGGTAACAGTCGAAGCCAAGGGTCGATCATCAACTAAGGTTACAGTTCAAGCGGAGGAGAGCCAGAGTGAGGGAGAAACGGGAGAGAGCCACGTGGttctctttgattttgttatgATCAAAGAAAAGGATGAAATTGGCGACATTGCTGAGTACTTGTCCACGGTGGTGAAGACCAGCTTCGAGAAACTGACCTTTGAATGGCCCACGGTGTGCAAACACTGTTTCCACAAGTTCACCACCTTTGAGAGTCTTCTAAGTCATACGCTGAAGTCGCACAAATCTCGGGGTAATGCCTACAAGTGTCCCATTGATGGTTGCAACAAGGAATTAAAGGGCACAAAATTTCTGGCTATGCATCTGGTGGTTTTGCATGCTCCCGTAGCTGAAATACCCATTTACGGCAGCTGTCCGGAGTGCAAGATGACTTTCTCCAACATTTTACAGTACAACAAACACTCTTGTGCGCATATGATCAAAAAGAAACGCGGTGTCCGCTTATTTTGTGAAATGTGTGCACAGGAGTTTCCCTCCTGGAAGCGgTTCAACTTTCACAATCAATTCCATCTGGAGAAGCATAGGCCTCGCGTCTGCTTTGTCTGTGATTATGCCAGCACCAACATCGATGAGCTTTTCCAGCACTTAAACTACGCCCATGAGCCGGCGGGGACCTTGTTTTGCGACCTCTGCGATCGAACTTTCCGGGATTCTGCCGTCTTTATGGAGCACAATAAGTCGCATGCCAATGTAAGCAGTACTACGTTCTCCTGTGGCGAATGCATGGCGGTATTTGAGTCACGAGGTCGTCTTACTGGACATATTcgCACCATGCATGGCAGCGTCATTAGCTGCGAGCTCTGTTCTCGCGAGTTTGGCAGCGAGGCCACCTACAGCATTCATATGAAGAAGCATCTAATTATCGAACGGGATCTGCAGGTCTGCGACAATTGCGGCCTGCTGAACGATAGCCAAGAAAAGTTGGCTGAACATGCTGAAGCCAAGAATTCACCCTGTTTTGGGGCTAAAATATATACGGAGATGCTTCGTGATGCCTATGTATGCGAATACTGTTCCTCGTACTTTAAGCAAAAGTCCGATCTGCAAGCACATCGTGCTTCTGGAATCCATAAGAATGGATTGTTTTGGTGCCAGCCATGTGGCAAGGATTTTCCCCACATGAAACTGTACCGCCATCACCTGCGCAACTTTCAAAAACTGCGAACGGATTCAACGCATCGGAAGCTGGAGATTTGTGTCTTCTACATGTGCGATCAGCCGGATTGCATGGAGGCTTATGTGAACTGGAACTCATTATACACGCATAAGCGGCGCACCCACGAATCGTCGGACAATCAAACAGAGAAGGCCTCGAAGTCCGGTCAGGATTGGATTTGCCAGTTCTGCTCAAAGGAGTGCCGCTCGAAGATGTCTCTGTCTGTTCATGTGGCAAGGAGCCATAATAATGACAACGTTGTCTGTTCGTTGTGCAATGCCTCGTACAAGAGCCAGGATGCATTGGACAAGCACCATGCCTACTGGCATGAGCCCATCGAGTGCCCGCAGTGTTTTAAGACTGTAAAAAATCGTCGAAACTACGATACGCATGTTAATGTCGTACATTCAAACAAGAAACGATATGCCTGCGGTGTTTGCGAGAAGGGATTCTATCATAAAAGCGAAATGGAGGCTCATCAAAAGCTCCATGGCCAGTTGTACAGCTGCGAACAGTGCAGCttcacaacaaaaaacaagaagtcTCTGTCCGTTCATGTCCTGGGTCAGCACTACAAGCGTTTCGCCTTCGAGTGCAAGGTGTGCAACAAGAGATTCGGACGTCGTCAGGGCCTGACCACGCACATTCAGCGAGCTCATGGCTCGAAGTACGTGTGCCGTGATTACTTCGAGGGCGGCTGCGGGCGCACCTTCGTCAGCAGTTCCCACCTGAATCTTCACGTGAGAAAGGTGCACGAAGGGACTATTTTTctgcaggaggaggaagaagagTACAGCGATGGGCCATCCACATCCAAGAAGCGCTGCTATCGCATCGACGATGATAGCAATATTGAGTTTGTAGAAATTCGAGACGgcgaggatgaggaagaggtGGAGGGAGAGGAGGAGGGAGAGGAATTTATTTTCGAGCCACTTTCCGTTAATAAGAATTGA
- Protein Sequence
- MSENQKNNSCLHCSVFNTKYQYQEIFDEFGKELGLQSLLAKHFQLDVVPDPRQRQLLCEVCVNMLIRLFDIDELQRQQDAAKARTEDSIPETKDPSPETSQESVHPVSPVSVKSDDKPAPAKGACNKEKITKPAVVASSSPPTREPSARISKRVPPPQVLPAPSKPSGRARESINPTRETAPAKEASPAKEAPPANEASPAKPKDSEQEHISVLIQNLLDEDEALCVEVTDEAEPICEEVEAIETAPIPEEPQTRRKMVLLNKKAARQPSLDEDIYIYEQEDILVSAVEKVTVEAKGRSSTKVTVQAEESQSEGETGESHVVLFDFVMIKEKDEIGDIAEYLSTVVKTSFEKLTFEWPTVCKHCFHKFTTFESLLSHTLKSHKSRGNAYKCPIDGCNKELKGTKFLAMHLVVLHAPVAEIPIYGSCPECKMTFSNILQYNKHSCAHMIKKKRGVRLFCEMCAQEFPSWKRFNFHNQFHLEKHRPRVCFVCDYASTNIDELFQHLNYAHEPAGTLFCDLCDRTFRDSAVFMEHNKSHANVSSTTFSCGECMAVFESRGRLTGHIRTMHGSVISCELCSREFGSEATYSIHMKKHLIIERDLQVCDNCGLLNDSQEKLAEHAEAKNSPCFGAKIYTEMLRDAYVCEYCSSYFKQKSDLQAHRASGIHKNGLFWCQPCGKDFPHMKLYRHHLRNFQKLRTDSTHRKLEICVFYMCDQPDCMEAYVNWNSLYTHKRRTHESSDNQTEKASKSGQDWICQFCSKECRSKMSLSVHVARSHNNDNVVCSLCNASYKSQDALDKHHAYWHEPIECPQCFKTVKNRRNYDTHVNVVHSNKKRYACGVCEKGFYHKSEMEAHQKLHGQLYSCEQCSFTTKNKKSLSVHVLGQHYKRFAFECKVCNKRFGRRQGLTTHIQRAHGSKYVCRDYFEGGCGRTFVSSSHLNLHVRKVHEGTIFLQEEEEEYSDGPSTSKKRCYRIDDDSNIEFVEIRDGEDEEEVEGEEEGEEFIFEPLSVNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00594689; iTF_00491654; iTF_00572041; iTF_00490222; iTF_00485295; iTF_00613634; iTF_00561903; iTF_00488816; iTF_00478158; iTF_00541233; iTF_00533236; iTF_00489519; iTF_00527478; iTF_00524570; iTF_00612956; iTF_00617788; iTF_00492382;
- 90% Identity
- -
- 80% Identity
- -