Dser006349.1
Basic Information
- Insect
- Drosophila serrata
- Gene Symbol
- -
- Assembly
- GCA_002093755.1
- Location
- NW:204069-207966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0051 0.33 11.2 3.8 2 23 330 352 329 352 0.95 2 18 0.082 5.3 7.4 0.1 1 23 359 384 359 384 0.94 3 18 0.029 1.9 8.8 2.2 2 23 395 416 395 416 0.93 4 18 0.037 2.4 8.5 0.1 3 23 457 478 456 478 0.95 5 18 0.0035 0.23 11.7 0.4 3 23 486 506 484 506 0.95 6 18 0.063 4.1 7.8 0.3 1 23 514 537 514 537 0.97 7 18 0.0052 0.34 11.2 0.3 2 23 542 563 541 563 0.97 8 18 2 1.3e+02 3.0 0.1 1 19 571 589 571 592 0.90 9 18 0.00032 0.021 15.0 0.4 1 22 611 632 611 635 0.90 10 18 0.15 9.4 6.6 1.6 3 21 642 660 642 661 0.90 11 18 0.0044 0.29 11.4 0.6 1 23 680 705 680 705 0.97 12 18 0.29 19 5.7 1.7 2 23 723 745 722 745 0.93 13 18 0.0052 0.33 11.2 0.3 2 23 751 773 750 773 0.92 14 18 0.0085 0.55 10.5 0.1 2 23 777 799 776 799 0.95 15 18 2.8e-05 0.0018 18.3 0.6 1 23 805 827 805 827 0.97 16 18 0.0018 0.12 12.6 1.3 1 23 831 854 831 854 0.95 17 18 8.3e-06 0.00054 20.0 0.9 1 23 860 883 860 883 0.97 18 18 2.1e-05 0.0013 18.7 0.1 1 23 887 915 887 915 0.86
Sequence Information
- Coding Sequence
- ATGTCGGAAAACCAGAAAAACAATAGCTGCCTGCATTGTAGTGTTTTCAATCCGAAATTCCGGTACCAGGAGATCTTCGATGAGTTCGGCACGGAGTTGGGCCTGCAATCGCTGCTGGCCAAGCACTTCCAGCTGGATGTGGAGCCCAAACCGCAGCAGAGGCAGCTTCTGTGCGAGGTGTGCGTCAACATGCTCATCCGGCTGTTCGATATTGATGAATTGCAGCGACAACAGGATGCGGCAAAGGCGGGGATCAAGGATCCAAGACCTGAGTCGTCTGTTCATCCTGTCATACCGGTCGTTGTCAAGCCTGACACTAAACCTGCAcccgctgctgccgctgtcAAGAAAGAAAAGATTCCGAAGCCTGCTCGTGCTCCTCCTCTTCCCACCAGGGAACCAAGTGCTCGGATCAGCAAAAGAGTTCCGCCACCTCAGGTATTGCCTGTTCCATCCAAACCTTCAGGGCGAGCCAAGGAGCCGGTGAAACCCGCCAAGGAAGCATCGCCTGCCAAGCCAAAGGACACTGATCAGGAACATATTAGTGTCCTCATACAAAACCTCCTCGACGAAGATGAGGCGATGTGCGAGGAAGTGGCAGACGAAACTGAGCCCTTCTGCGAGGAAGTAAAAGCAATAGAAGTTGCTTCCATGCCAGAGAAGCAGAAAACCCAAAGGAAAGTTGTTCTCTTAAACAAGAAAGCCGTGCGGCAGCCTAGTCTAGATGAAgatgtttatatatttgagCAAGAAGATATTTTAGAACCATCTGTGGAGAATGTAAAGATCGAAGCAAAGGGTCGATCATCAGCTAAGATAACAGTTCAAGCCGAAGAGAGCCAGAGTGAGGGAGAAACCGAAGAGAGCCATGTGATTCTATTCGACTTTGTGATGATCAAAGAAAAGGATGACATTGGTGACATTGCCGAGTACTTGTCCACAGTTGTGAAAACCAGCTTCGAGAAACTGACCTTTGAATGGCCCACGGTGTGCAAACACTGTTCCCAGAAGTTTACCACCTTTGAGAGTCTTCTAAGTCATACGCTCAAGTCGCACAAATCTCGGGGTAATGCCTACAAGTGTCCCATTGATGGCTGCAACAAGGAGTTAAAGGGCAGCAAATTTCTGGCCATGCATCTGGTTGTTTTGCATGCTCCCGTAGCTGAAATCCCCATTTACGGCAGCTGTCCGGAGTGCAAGATGACTTTCTCAAACATTTTGCAGTATAACAAACACTCTTGCGCTCATATGATCAAAAAGAAGCGCGGTGTTCGTCTATATTGTGAAATGTGTGCTCAGGAGTTTCCCTCCTGGAAGCGtTTCAATTTTCACAATCAATTCCATTTGGAGAAGCATAGGCCTCGCGCCTGTTTTGTCTGTGATTATGCCAGCACCAACATCGATGAACTGTTCCAACACTTAAACTACTCCCATGAGCCTGTGGGCACTTTGTTTTGCGACCTTTGCGATCGAACTTTCCGGGATCCCGGCGTGTTCATGGAGCACAATAAGTCGCACGCCAATGTTAGCAGCACTAGCTATCACTGCGGCGAATGCATGGCGGTCTTTGAGTCCCGAGGTCGACTAGCTGGACACATGCGCTCAATGCACGGCAGCATCATTAGCTGCGAGCTCTGTTCCCGAGAGTTTGGTAGCGAAGCAACCTACAGCATTCATATGAAGAAGCATCTAATTATTGAGCGGGATTTGCACGTATGCAGCAATTGCGGCCTGCTGAGCGATAGCAAAGAAAAGTTGGCTGAACATGCGGGAACCAAAAATTCACCCTGTTTTGCTGCCAAGATATATACGGAGATGCTACGCGATGCCTATATCTGCGAATACTGTTCCTCGTACTTTAAGCAAAAGTCCGATCTGCAAGCGCATCGCGCGTCCGGAATCCATAAGAATGGGCTATTCTGGTGCCAGCCGTGTGGCAAGGATTTTCCACATATGAAACAATACCGCCATCACCTGCGCAACTTTCAGAAACTGCGATCGGATTCGGCGCATCGGAAGCTGGAGATTTGTGTATTCTATATGTGCGATCAGTCGGACTGCAGGGAGGCCTATGTGAACTGGAACTCGTTGTACACGCACAAGCGGCGCACCCACGAATCCTCGGATAAGCAGACAGATAAGGCCTCAAAGTCTGGACAGGATTGGATTTGCCAATTCTGCCTAAAGCAGTGTCGCTCAAAAATGTCCTTGTCTGTTCATGTGGCAAGGAGCCACAATAATGACAACGTTGTATGTTCGTTGTGCAATGCTTCTTATAAGAGCCAGGATGCCTTGGACAAGCACCATGCCTACTGGCATGAACCCATCGAATGCCCGGAGTGCTTTAAGATTGTCAAAAATCGTCGAAATTACGACACGCATGTTAATGTTGTGCATTCAAACAAGAAACGCTATGCTTGCGGTGTTTGCGAGAAGGGATTTTATCATAAAAGCGAAATGGAGGCTCATCAAAGGCTACATGGCCAGTTATACAGCTGCGAGAAGTGCACCTTCAccacgaaaaacaaaaagtccCTGTCCGTTCATATCTTGGGTCAGCACTACAAGCGTTTCGCCTTTGAGTGCAAGGTGTGCAACAAGAGATTCGGACGTCGTCAGGGCCTGACTACGCACATTCAGCGGGCTCATGGTTCCAAGTACGTTTGCCGTGATTATTTTGAAGGCGGATGCGGGCGCACCTTCGTCAGCAGTTCCCAGCTGAATGTTCACGTGAGAAAAGTGCACGAAGGCACTATTCTTCTGCAGGAGGAGGAAGAAGAGGACAGTGATGGCCCATCCACATCCAAGAAACGCTGCTATCGGATCGATGATGATAGCAATATAGAGTTTGTAGAAATTGGAGACGGcgaggaagaggaggaagaATATATTGACTAG
- Protein Sequence
- MSENQKNNSCLHCSVFNPKFRYQEIFDEFGTELGLQSLLAKHFQLDVEPKPQQRQLLCEVCVNMLIRLFDIDELQRQQDAAKAGIKDPRPESSVHPVIPVVVKPDTKPAPAAAAVKKEKIPKPARAPPLPTREPSARISKRVPPPQVLPVPSKPSGRAKEPVKPAKEASPAKPKDTDQEHISVLIQNLLDEDEAMCEEVADETEPFCEEVKAIEVASMPEKQKTQRKVVLLNKKAVRQPSLDEDVYIFEQEDILEPSVENVKIEAKGRSSAKITVQAEESQSEGETEESHVILFDFVMIKEKDDIGDIAEYLSTVVKTSFEKLTFEWPTVCKHCSQKFTTFESLLSHTLKSHKSRGNAYKCPIDGCNKELKGSKFLAMHLVVLHAPVAEIPIYGSCPECKMTFSNILQYNKHSCAHMIKKKRGVRLYCEMCAQEFPSWKRFNFHNQFHLEKHRPRACFVCDYASTNIDELFQHLNYSHEPVGTLFCDLCDRTFRDPGVFMEHNKSHANVSSTSYHCGECMAVFESRGRLAGHMRSMHGSIISCELCSREFGSEATYSIHMKKHLIIERDLHVCSNCGLLSDSKEKLAEHAGTKNSPCFAAKIYTEMLRDAYICEYCSSYFKQKSDLQAHRASGIHKNGLFWCQPCGKDFPHMKQYRHHLRNFQKLRSDSAHRKLEICVFYMCDQSDCREAYVNWNSLYTHKRRTHESSDKQTDKASKSGQDWICQFCLKQCRSKMSLSVHVARSHNNDNVVCSLCNASYKSQDALDKHHAYWHEPIECPECFKIVKNRRNYDTHVNVVHSNKKRYACGVCEKGFYHKSEMEAHQRLHGQLYSCEKCTFTTKNKKSLSVHILGQHYKRFAFECKVCNKRFGRRQGLTTHIQRAHGSKYVCRDYFEGGCGRTFVSSSQLNVHVRKVHEGTILLQEEEEEDSDGPSTSKKRCYRIDDDSNIEFVEIGDGEEEEEEYID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00593985;
- 90% Identity
- iTF_00491654;
- 80% Identity
- -