g17056.t2
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- bab1_1
- Assembly
- GCA_009870125.2
- Location
- CM020872.1:63393550-63395179[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.2e-18 2.1e-14 53.1 0.0 1 43 56 99 56 101 0.95 2 3 6.8 1.5e+04 -4.1 0.9 6 13 220 227 218 229 0.83 3 3 2.1 4.6e+03 -2.4 0.0 22 31 353 362 350 363 0.81
Sequence Information
- Coding Sequence
- ATGATGGAGAATTCGCAGGCCTGGATGGGGGCCACCGCTGGCTCCGCGCTGGCAGCAGACAGCTACCAGTACCAGCTTCAGTCCATGTGGCAAAAGTGCTGGAACACCAATCAGAATCTGATGCATCACATGCGCTTCCGGGAGCGTGGACCCCTCAAGTCGTGGCGCCCCGAAACGATGGCCGAGGCCATCTTCAGTGTCCTCAAGGAggggctgtcgctgtcgcaggCGGCCCGCAAGTACGACATTCCCTATCCCACGTTCGTGCTGTATGCGAATCGGGTGCACAATATGCTGGGACCCTCCATCGATGGCGGACCCGATCTGCGGCCCAAGGGCCGTGGGCGGCCCCAGCGCATCCTCTTGGGCATATGGCCGGATGAGCACATCAAGGGGGTGATCAAGACGGTGGTTTTTCGCGATGCCAAGGACATGAAGGACGACAGCCTAGGCGGCCACATGCCGCCCTACGGTCGTCACTCGGACATGACGCTCAGCTATCCAGGCGCTAGTGGCGGCATTCCAGGGCCAGGAGCCGCTAGCCTCAGCGCTCTGGCCTGTCCCAATGGCATGGGCAGCGGTGGAGGCGGAGTCACAGGACCAGGGGGAGGCGTCGGTGTGGGTCCTGGCGTTGATCAGCACATGTCACAGGAAACAGCagccgccgttgccgccgtGGCACACAATATACGACAGCAGATGCAGATGGCCGCCGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCGGTGGTGCCACCGCCCGGGCTGTTCAACCTGCCGCCGCATTTGGCAGGTGGGCCAGGCCCGCccggcagcaggggcagcattTCCCCGGCGTTAAGCAGCGGTTCAGGGCCGCGACACGCTCCCTCACCGTGCGGTCCCGCCGGCCTGTTGCCGAATCTGCCGCCCAGCATGGCCGTTGCTCTGCACCGTGacccggcggcggcggcgctgctcagccagcaccagcagcagcagcatcacttgcagcagctgcacctccagcagcagcaacagcagcagcagcaccacttgcaccagcagcaggtggCGGCAGCGCATCATGGGATGCCGCACAAGTCCGGTTTCGGTGCCAGTTCCATGGCGGCGGCCAGTGCCGCCTCCACatccgcatcatcatcatcctcctccCACCAGCATTCGCACTCGCATCctcattcgcattcgcattcgcatggggagaagcagcagaagaaggggAGTCCTCACCGCAGCGAAACCCCGCGCCTGCACTCGCCGTTGGGCGATTTGGGGCTCGAGATGTCCAGCTACAAGCGAGAGTACTCGCCCAGCCGCCTCTTTGCCGACGATCTGGCGGAGCTGGTGGGCGCCAGCGTTTCCTCCTCATCATCGGTGAcgcaaggagcagcaggcggggGATCTTCGGCGGCCATTGGAGAGGCTCCCCGCTCCAGTTCAAGCGGAGGCATTAAAGTGGAACCCATTACCACCACAAGCGAGTAA
- Protein Sequence
- MMENSQAWMGATAGSALAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMKDDSLGGHMPPYGRHSDMTLSYPGASGGIPGPGAASLSALACPNGMGSGGGGVTGPGGGVGVGPGVDQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPVVPPPGLFNLPPHLAGGPGPPGSRGSISPALSSGSGPRHAPSPCGPAGLLPNLPPSMAVALHRDPAAAALLSQHQQQQHHLQQLHLQQQQQQQQHHLHQQQVAAAHHGMPHKSGFGASSMAAASAASTSASSSSSSHQHSHSHPHSHSHSHGEKQQKKGSPHRSETPRLHSPLGDLGLEMSSYKREYSPSRLFADDLAELVGASVSSSSSVTQGAAGGGSSAAIGEAPRSSSSGGIKVEPITTTSE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00580640; iTF_00517636; iTF_00474430; iTF_00603271; iTF_00473706; iTF_00611277; iTF_00484370; iTF_00471539; iTF_00480787; iTF_00535968;
- 90% Identity
- iTF_00603271;
- 80% Identity
- iTF_00580640;