Dlow010742.1
Basic Information
- Insect
- Drosophila lowei
- Gene Symbol
- bab1
- Assembly
- GCA_008121275.1
- Location
- CM017781.1:8218428-8225122[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-18 1.7e-14 53.1 0.0 1 43 75 118 75 120 0.95 2 2 6.1 1.2e+04 -4.1 0.9 6 13 239 246 237 248 0.83
Sequence Information
- Coding Sequence
- ATGACGAACAAGTCGACGAGGGAGAAGGCCCCCGCCATCAGCACCCATCGAGCCAAAATGATGGAGAATTCGCAGGCCTGGATGGGGGCTACCGCTGGCTCCGCGCTGGCAGCAGACAGCTACCAGTACCAGCTTCAGTCCATGTGGCAAAAGTGCTGGAACACCAATCAGAATCTGATGCATCACATGCGCTTCCGGGAGCGTGGACCCCTCAAGTCGTGGCGCCCCGAAACGATGGCCGAGGCCATTTTCAGTGTCCTCAAGGAGGGGCTTTCGCTGTCGCAGGCGGCCCGCAAGTACGACATTCCCTATCCCACATTCGTGCTATATGCGAATCGGGTGCACAATATGCTGGGACCCTCCATCGATGGCGGACCCGATCTGCGGCCCAAGGGCCGTGGGCGGCCCCAGCGCATCCTCTTGGGCATATGGCCGGATGAGCACATCAAGGGGGTGATCAAGACGGTGGTTTTTCGCGATGCCAAGGACATGAAGGACGACAGCCTAGGCGGCCACATGCCGCCCTACGGTCGTCACTCGGACATGACGCTCAGCTATCCAGGCGCTAGTGGCGGCATTCCAGGGCCAGGAGCCGCTAGCCTCAGCGCTCTGGCCTGTCCCAATGGCATGGGCAGCGGTGGAGGCGGAGTCCCAGGACCAGGAGGAGGCGTCGGTGTGGGGCCTGGCGTTGATCAGCACATGTCACAGGAAACAGCAGCCGCCGTTGCCGCCGTGGCACACAATATACGACAGCAGATGCAGATGGCCGCCGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCGGTGGTGCCACCGCCCGGGCTGTTCAACCTGCCGCCACATTTGGCGGGTGGGCCAGGGCCGCCCGGCAGCAGGGGCAGTATTTCCCCGGCGTTAAGCAGCGGTTCAGGGCCGCGACACGCTCCCTCGCCGTGCGGTCCCGCCGGCCTGTTGCCGAATCTGCCGCCCAGCATGGCCGTTGCTCTGCACCGTGAcccggcggcggcggcgctGCTcagccagcaccagcagcagcagcatcacttgcagcagctgcactccagcagcagcagcagcagcagcagcagcaacagcagcaccacttGCATCAGCAGCAGGTGGCGGCAGCGCATCATGGGATGCCGCACAAGTCCGGTTTCGGTGCCACATTCACACTCGCATCctcattcgcattcgcattcgcatggggagaagcagcagaagaaggggAGTCCTCACCGCAGCGAAACCCCGCGCCTGCACTCGCCGTTGGGCGACTTGGGGCTCGAGATGTCCAGCTACAAGCGAGAGTACTCGCCCAGCCGCCTCTTTGCCGACGATCTGGCGGAGCTGGTGGGCGCCAGCGTGTCCTCCTCATCATCGGTGAcgcaaggagcagcaggcgggGGATCTTCGGCGGCCATTGGAGAGGCTCCCCGCTCCAGTTCAAGCGGAGGCATAAAAGTGGAGCCCATTACCACCACTAGCGAGTAA
- Protein Sequence
- MTNKSTREKAPAISTHRAKMMENSQAWMGATAGSALAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMKDDSLGGHMPPYGRHSDMTLSYPGASGGIPGPGAASLSALACPNGMGSGGGGVPGPGGGVGVGPGVDQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPVVPPPGLFNLPPHLAGGPGPPGSRGSISPALSSGSGPRHAPSPCGPAGLLPNLPPSMAVALHRDPAAAALLSQHQQQQHHLQQLHSSSSSSSSSSNSSTTCISSRWRQRIMGCRTSPVSVPHSHSHPHSHSHSHGEKQQKKGSPHRSETPRLHSPLGDLGLEMSSYKREYSPSRLFADDLAELVGASVSSSSSVTQGAAGGGSSAAIGEAPRSSSSGGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00580639;
- 90% Identity
- -
- 80% Identity
- -