Damb012440.1
Basic Information
- Insect
- Drosophila ambigua
- Gene Symbol
- bab1
- Assembly
- GCA_018150905.1
- Location
- JAECWS010000002.1:19893544-19895239[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-18 1.6e-14 53.1 0.0 1 43 56 99 56 101 0.95 2 2 6.2 1.2e+04 -4.1 0.9 6 13 226 233 224 235 0.83
Sequence Information
- Coding Sequence
- ATGATGGAGAATTCGCATGCCTGGATGGGTGCCACCGCTGGCTCCACACTGGCAGCAGACAGCTACCAGTACCAGCTGCAGTCGATGTGGCAAAAGTGCTGGAACACCAATCAGAATCTGATGCATCACATGCGCTTCCGGGAGCGTGGACCGCTCAAGTCGTGGCGACCCGAGACGATGGCCGAGGCCATTTTCAGTGTGCTCAAGGAGGGGCTCTCCCTGTCGCAGGCGGCACGCAAGTACGACATACCCTACCCCACGTTCGTGCTGTATGCGAATCGGGTGCACAACATGCTGGGACCCTCCATCGATGGCGGACCCGATCTGCGGCCCAAGGGACGTGGCCGGCCGCAGCGTATCCTGCTGGGCATTTGGCCGGATGAGCACATCAAGGGGGTGATCAAGACGGTGGTTTTTCGCGATGCCAAGGACATGAAAGACGACAGCCTAGGCGGCCACATGCCGCCCTACGGTCGTCACTCGGACATGACGCTCAGCTATCCAGGCGCTAGTGGCGGCATTCCAGGGCCAGGAGCTGCTAGCCTCAGCGCTCTGGCCTGTCCCAATGGCATGGGCAGCGGTGGAGGCGGAGTCCCGGGACCCGGAGGTGGGGTCGGTGTCGGTATCGGAGGCGGCGTGGGTCCAGGCGTCGATCAGCACATGTCGCAGGAAACAGCAGCCGCCGTTGCCGCCGTGGCGCACAACATACGACAGCAGATGCAGATGGCCGCCGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCGGTGGTGCCACCACCCGGACTGTTTAACCTGCCGCCACATCTGGCCAGTGGGCCACCCGGCAGCAGGGGCAGCATTTCACCGGCGTTAAGCAGCGGTTCAGGGCCGCGACACGCTCCCTCGCCGTGCGGCCCCGCCGGCCTGCTGCCGAATCTGCCGCCCAGCATGGCCGTTGCACTGCACCGCGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATCATCCTCCTCCTCCCACCAGCATTCGCATTCGCACTCGCATCCGCATTCCCATTCACATTCGCATGGGGAGAAGCTGCTCCAAAAGAAGGGCAGTCCTCACCGCAGCGAAACGCCGCGCCTGCACTCGCCTCTGGGCGATTTGGGGCTCGAGATGTCCAGCTACAAGCGGGAGTTCTCGCCCAGCCGGCTCTTTGCCGACGATCTGGCGGAGTTGGTGGGCGCCAGCGTGTCCTCCTCGTCATCGGTGACGCAAGGCGCCGCAGGAGGAGGAAGTTCCGCGGCCATTGGAGAGGCTCCCAGCTCCAGTTCAAGCGGTGGCATCAAAGTGGAACCCATTACCACTAATAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATAGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMKDDSLGGHMPPYGRHSDMTLSYPGASGGIPGPGAASLSALACPNGMGSGGGGVPGPGGGVGVGIGGGVGPGVDQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPVVPPPGLFNLPPHLASGPPGSRGSISPALSSGSGPRHAPSPCGPAGLLPNLPPSMAVALHRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASSSSSHQHSHSHSHPHSHSHSHGEKLLQKKGSPHRSETPRLHSPLGDLGLEMSSYKREFSPSRLFADDLAELVGASVSSSSSVTQGAAGGGSSAAIGEAPSSSSSGGIKVEPITTNSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00580639;
- 90% Identity
- -
- 80% Identity
- -