Dalg015860.1
Basic Information
- Insect
- Drosophila algonquin
- Gene Symbol
- bab1
- Assembly
- GCA_035041765.1
- Location
- JAWNKY010003069.1:217068-218698[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-17 2.1e-14 53.1 0.0 1 43 56 99 56 101 0.95 2 3 7.5 1.5e+04 -4.1 0.9 6 13 220 227 218 229 0.83 3 3 2.3 4.7e+03 -2.4 0.0 22 31 353 362 350 363 0.81
Sequence Information
- Coding Sequence
- ATGATGGAGAATTCGCAAGCCTGGATGGGGGCCACCGCTGGCTCCACGCTGGCAGCAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAATCAGAATCTGATGCATCATATGCGCTTCCGGGAGCGTGGACCCCTCAAGTCGTGGCGCCCCGAAACGATGGCCGAGGCCATTTTCAGTGTCCTCAAGGAGGGACTTTCGCTGTCGCAGGCGGCCCGCAAGTACGACATTCCCTATCCCACATTCGTTCTGTATGCGAATCGGGTGCACAATATGCTTGGACCCTCCATCGATGGCGGACCCGATCTGCGGCCCAAGGGCCGTGGGCGGCCCCAGCGCATCCTCTTGGGCATATGGCCGGATGAGCATATCAAGGGGGTGATCAAGACGGTGGTTTTTCGCGATGCCAAGGACATGAAGGACGACAGCCTAGGCGGCCACATGCCGCCCTACGGTCGTCACTCGGACATGACGCTCAGCTATCCAGGCGCTAGTGGCGGCATTCCAGGGCCAGGAGCCGCTAGCCTCAGCGCTCTGGCCTGTCCCAATGGCATGGGCAGCGGTGGAGGCGGAGTCCCAGGCCCAGGAGGTGGCGTCGGTGTGGGTCCTGGCGTTGATCAGCATATGTCGCAGGAAACAGCagccgccgttgccgccgtGGCGCACAATATAAGACAGCAGATGCAGATGGCCGCCGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCGGTGGTGCCACCGCCCGGGCTGTTCAACCTGCCGCCACATTTGGCGGGTGGGCCAGGGCCGCCCGGCAGCAGGGGCAGTATTTCCCCGGCGCTAAGTAGCGGTTCAGGGCCGCGACACGCTCCCTCGCCGTGCGGTCCCGCCGGCCTGTTGCCGAATCTGCCGCCCAGCATGGCCGTTGCTCTGCACCGTGacccggcggcggcggcgctgctcagccagcaccaacagcaacagcatcacttgcagcagctgcacctccaacagcagcaacagcaacagcagcaccacttgcatcagcagcaggtggCGGCAGCGCATCATGGGATGCCGCACAAGTCCGGTTTCGGTGCCAGTTCCATGGCGGCGGCCAGTGCCGCCTCCACatccgcatcatcatcatcctcctcccaccagcattcgcattcgcatcctCATCCGCACTCGCATTCGCATGGGGAGAAGCCCCAGAAGAAGGGAAGTCCTCACCGCAGCGAAACCCCGCGCCTCCACTCGCCGTTGGGCGATTTGGGGCTCGAGATGTCCAGCTACAAGAGAGAGTTCTCCCCCAGCCGACTCTTTGCCGACGATCTTGCGGAATTGGTGGGTGCCAGCGTgtcatcctcatcatcggTGACGcatggagcagcaggagggggaTCTTCGGCGGCCATTGGGGAAGCTCCCCGCTCCAGTTCAAGCGGAGGCATTAAGGTGGAACCCATCACCACCACTAGCGAGTAA
- Protein Sequence
- MMENSQAWMGATAGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMKDDSLGGHMPPYGRHSDMTLSYPGASGGIPGPGAASLSALACPNGMGSGGGGVPGPGGGVGVGPGVDQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPVVPPPGLFNLPPHLAGGPGPPGSRGSISPALSSGSGPRHAPSPCGPAGLLPNLPPSMAVALHRDPAAAALLSQHQQQQHHLQQLHLQQQQQQQQHHLHQQQVAAAHHGMPHKSGFGASSMAAASAASTSASSSSSSHQHSHSHPHPHSHSHGEKPQKKGSPHRSETPRLHSPLGDLGLEMSSYKREFSPSRLFADDLAELVGASVSSSSSVTHGAAGGGSSAAIGEAPRSSSSGGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00580639;
- 90% Identity
- iTF_00603271;
- 80% Identity
- -