Dsub006251.1
Basic Information
- Insect
- Drosophila subsilvestris
- Gene Symbol
- bab1
- Assembly
- GCA_035043285.1
- Location
- JAWNNB010001571.1:4820436-4822120[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-17 1.9e-14 53.2 0.0 1 43 56 99 56 101 0.95 2 3 8.9 1.4e+04 -4.0 0.9 6 13 224 231 222 233 0.83 3 3 2.7 4.4e+03 -2.4 0.0 22 31 344 353 341 354 0.81
Sequence Information
- Coding Sequence
- ATGATGGAGAATTCGCATGCCTGGATGGGGGCCACCGCTGGCTCCACACTGGCAGCAGACAGCTACCAGTACCAGCTGCAGTCGATGTGGCAAAAGTGCTGGAACACCAATCAGAATCTGATGCATCACATGCGCTTCCGGGAGCGTGGACCCCTTAAGTCGTGGCGACCCGAAACGATGGCCGAGGCCATTTTCAGTGTGCTCAAGGAGGGGCTCTCCCTGTCGCAGGCGGCCCGCAAGTACGACATTCCCTATCCGACGTTCGTGCTGTATGCGAATCGAGTGCACAATATGCTGGGACCATCGATCGATGGCGGACCCGATCTGCGGCCAAAGGGACGTGGCCGGCCGCAGCGTATCCTGCTGGGCATTTGGCCAGATGAGCACATCAAGGGGGTGATCAAGACGGTGGTTTTTCGCGATGCCAAGGACATGAAAGACGACAGCCTAGGCGGCCACATGCCGCCCTACGGTCGTCACTCGGACATGACGCTCAGCTATCCAGGCGCTAGTGGCGGCATTCCAGGGCCAGGAGCTGCTAGCCTCAGCGCTCTGGCCTGTCCCAATGGCATGGGCAGCGGTGGAGGCGGAGTCCCAGGACCCGGAGGAGGAGTCGGTGTCGGCGTTGGCGTGGGTCCAGGCGTCGATCAGCACATGTCGCAGGAAACAGCAGCCGCCGTTGCCGCCGTGGCGCACAACATACGACAGCAGATGCAGATGGCCGCCGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCGGTGGTGCCACCGCCCGGACTGTTCAACCTGCCGCCACATCTGGCCAGTGGGCCACCcggcagcaggggcagcattTCACCGGCGTTAAGCAGCGGTTCAGGGCCGCGACACGCGCCCTCGCCGTGCGGCCCCGCCGGCCTGCTGCCGAATCTGCCGCCCAGCATGGCCGTTGCACTGCACCGCGacccggcggcggcggccaacagcaacagcaagcagcagcagcatcagcagcagcagcaacatcacttgcatcagcagcaggtggCGGCAGCGCATCATGGGATGCCGCACAAGTCCGGTTTCGGTGCCAGTTCCATGGCGGCGGCCAGTGCCGCCTCCACATCCgcatcatcctcctcctcccaccagcattcgcattcgcactcGCATccgcattcccattcccattcgcatGGGGAGAAGCTGCTCCAAAAGAAGGGCAGTCCTCACCGCAGCGAAACGCCGCGCCTGCACTCGCCGTTGGGTGATTTGGGGCTCGAGATGACCAGCTACAAGCGGGAGTTCTCGCCCAGCCGCCTCTTTGCCGACGATCTGTCGGAGTTGGTGGGCGCCAGCGTGTCCTCCTCATCATCGGTGACCCAgggagctgcaggaggaggaaaTTCCACGGCCATTGGCGAGACACCCAGCTCCAGTTCAAGCGGTGGCATCAAAGTGGAACCCATTACCACTACTAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATAGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMKDDSLGGHMPPYGRHSDMTLSYPGASGGIPGPGAASLSALACPNGMGSGGGGVPGPGGGVGVGVGVGPGVDQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPVVPPPGLFNLPPHLASGPPGSRGSISPALSSGSGPRHAPSPCGPAGLLPNLPPSMAVALHRDPAAAANSNSKQQQHQQQQQHHLHQQQVAAAHHGMPHKSGFGASSMAAASAASTSASSSSSHQHSHSHSHPHSHSHSHGEKLLQKKGSPHRSETPRLHSPLGDLGLEMTSYKREFSPSRLFADDLSELVGASVSSSSSVTQGAAGGGNSTAIGETPSSSSSGGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00580639;
- 90% Identity
- iTF_00517636; iTF_00473706; iTF_00471539; iTF_00580639; iTF_00580640;
- 80% Identity
- -