Dmon016526.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila montana
Gene Symbol
-
Assembly
GCA_003086615.1
Location
LUVX01013017.1:19711-22338[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 9.8e-06 0.00085 19.7 3.3 1 23 87 109 87 109 0.98
2 16 0.0074 0.63 10.7 3.1 1 23 115 137 115 137 0.96
3 16 0.00013 0.011 16.1 1.6 1 23 143 165 143 165 0.98
4 16 6.6e-06 0.00057 20.2 0.1 2 23 189 210 188 210 0.97
5 16 2.9e-05 0.0025 18.2 5.8 1 23 216 238 216 238 0.97
6 16 0.00025 0.022 15.3 1.3 1 23 244 266 244 266 0.98
7 16 0.00021 0.018 15.5 0.4 1 23 275 297 275 297 0.95
8 16 0.00013 0.011 16.2 0.9 1 20 438 457 438 458 0.95
9 16 3.5e-08 3e-06 27.4 3.9 1 23 473 495 473 495 0.98
10 16 1.9e-07 1.7e-05 25.1 2.1 1 23 501 523 501 523 0.99
11 16 5.6e-06 0.00048 20.5 3.5 1 23 529 551 529 551 0.99
12 16 2.6e-07 2.2e-05 24.7 2.4 1 23 561 583 561 583 0.98
13 16 2e-06 0.00017 21.9 4.6 1 23 589 611 589 611 0.99
14 16 1.4e-06 0.00012 22.3 2.1 1 23 617 639 617 639 0.97
15 16 4.1e-05 0.0035 17.8 3.9 2 23 646 667 645 667 0.97
16 16 4.7e-06 0.0004 20.7 5.7 1 23 673 695 673 695 0.98

Sequence Information

Coding Sequence
ATGGACGTGAGCAGTGTGAAAATCAAGCTGGAGCAAGATCAGGAGGCGCTACTAATGGATTCAGTCTCAGAGGACGCCAGCTGTGACCAGCTAAAAACTGAAAGCAATTTTACGGAGATGGACATAGGACCCATCAAAATAGACCCGGATGCGACTGCAGTGTGTCAGGGACAGGCAGCTGCCGGCAACGTAAGGGATCGGCGAAAAAAGCAAAGACCTGCCGCAACACTGGAGGATTACAGACTGCCCAAGGGACCGCATCAGTGCCCACACTGTCCACGGCATTTCGAAAGAAGCGATGAGCTTTCAATACACCTGCAGATCCACACCGATAAATTGCCCTACAAGTGCGTCTATTGTCCGAGCAGTTTTTCCCACAAATCGATTTACACCACGCACATGTACGGACATACTGGCAAATTTCCGCATCAGTGCCCGGACTGTCCGCAGGGTTTCCTGAAATACGGCGATCTCAAGAAGCATCGACGCACgcatattgataaaaatgcatttaaatgtccGTTGTTCCCCAgaatttgcacacacacggGCAAAGGTATACTGCAGTGCCCGCAGTGTCCGCGTGGCTTTACGAAGAGCTACGAGCTGGAAATTCATCTTCAGATTCATAGCGATAAGCTGCCCTACAAGTGTCCACACTGCCCGAATAGCTTTGCACACAAATCGAACTTTAAAGCGCATGTCTGTGAGCATACGGGCGAGTTTCCATTCAGATGCCGATACTGCCCACGGGGCTTTATGAAGCGGAGCGATTTGTTAAACCACGCGTATACGCACAGCGAGCATACGGACGAGCTGCCATTCAGATGCCCATATTGCCCACAGAGCTTTCTGACGCAAAATGATCTGGAAAAACACTCAGATGTTCATAGAGCTAAGATTTCGCAAAACTATCGCAACAAACTGGGCTCTAAATCGGGCTTAAAAAGCCACAAAGACAATGCGCATAAAGAAATCATAGACATTAGCTGTATCAAAAAAGAGCGAGAGGAGCTAAGTGAATCCCTTCCGAAGCAACCCCAAGTCGAGCACAAAGCTAAAAACGATCCGTCTATCAGCAAAACAGACGAAACGCCAGAGCTAATAGCTCCCGACCGCATAAAAGTGGAGCCCGGAGCGGAGGACAGCGGTGCAATAGGTTCTACAGCGGAATACAGTGCCTTAGAAAAGTCTGATAGTAAATGTGATTTGGCTGAGGGTAATATTATGCTGGGCCCCATCAAAATAGAACCGGATGAGAGCAGGCCCCCGGAGGAACAGACTTTAGTAAACGTGCGCTCAAAGCGAGGCTATAAATGCAAAGTTTGTAGCAAGACATTCAAGGACATAAAAGAGCTGCGCCTGCACGAAAAATGCTACACACACTCAAGCAAGCAGACGACAGGCAATCGGCCGTATAAATGCGAGCATTGCTCAAAGACTTTCACCCAGTCGTACAACCTGACGGTGCACATGCGCGGCCACACGGGTGAGCGGCCATACAAATGCCCGCACTGCACGCGCACATTTATCCAGAGCTCGGGCCTGAAGATACACATACGACAACATTCCGGCGAACGGCCATATAAGTGCGCCCATTGTCCGCGCACATTTGCCAACAACTCGAATCGTAAGAAGCACCTGCAGAGTCATGGCATGGATGTTGCCAGCGATCTGCCGTACAGATGTCCGCATTGCCccaaaacatttgcacaaaactcaCATTTCATTGTGCACGTACGTGGACACACCGGCGAACGGCCCTATCAATGCACCTATTGCACCAAGGGCTTCAAGGTCAGTCACGATCTGAAGAAGCATCTGCGCAGCCATACGGGCGAGCGTCCATATGCGTGTCCGCATTGTGCCAAAACCTTTGCGCAGAACTCGCATTTCAATGCCCATCTACGTGGCCATGCCAGCGAACGACCATTGAAGTGCCCCCACTGTCCGCGCACCTTCCTGAAAGCCTACAACCTCAAGGTGCATATGTGCACCCATACTGGAGAGCGGCCGTACAAGTGTCCGCACTGTCCGAAAACCTTTACCCAAAACTCTTATTGCAAGGCGCATATGCGTGagcatataaaatga
Protein Sequence
MDVSSVKIKLEQDQEALLMDSVSEDASCDQLKTESNFTEMDIGPIKIDPDATAVCQGQAAAGNVRDRRKKQRPAATLEDYRLPKGPHQCPHCPRHFERSDELSIHLQIHTDKLPYKCVYCPSSFSHKSIYTTHMYGHTGKFPHQCPDCPQGFLKYGDLKKHRRTHIDKNAFKCPLFPRICTHTGKGILQCPQCPRGFTKSYELEIHLQIHSDKLPYKCPHCPNSFAHKSNFKAHVCEHTGEFPFRCRYCPRGFMKRSDLLNHAYTHSEHTDELPFRCPYCPQSFLTQNDLEKHSDVHRAKISQNYRNKLGSKSGLKSHKDNAHKEIIDISCIKKEREELSESLPKQPQVEHKAKNDPSISKTDETPELIAPDRIKVEPGAEDSGAIGSTAEYSALEKSDSKCDLAEGNIMLGPIKIEPDESRPPEEQTLVNVRSKRGYKCKVCSKTFKDIKELRLHEKCYTHSSKQTTGNRPYKCEHCSKTFTQSYNLTVHMRGHTGERPYKCPHCTRTFIQSSGLKIHIRQHSGERPYKCAHCPRTFANNSNRKKHLQSHGMDVASDLPYRCPHCPKTFAQNSHFIVHVRGHTGERPYQCTYCTKGFKVSHDLKKHLRSHTGERPYACPHCAKTFAQNSHFNAHLRGHASERPLKCPHCPRTFLKAYNLKVHMCTHTGERPYKCPHCPKTFTQNSYCKAHMREHIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00531084; iTF_00531085; iTF_00526709; iTF_00490910; iTF_00506249; iTF_00563305; iTF_00617036; iTF_00475347; iTF_00534712;
90% Identity
iTF_00506249;
80% Identity
-