Dlac011485.1
Basic Information
- Insect
- Drosophila lacicola
- Gene Symbol
- -
- Assembly
- GCA_035045355.1
- Location
- JAWNPB010000220.1:68499-70715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.2e-06 0.00035 20.9 3.4 1 23 87 109 87 109 0.98 2 17 0.0098 0.66 10.7 3.1 1 23 115 137 115 137 0.96 3 17 0.00018 0.012 16.1 1.6 1 23 143 165 143 165 0.98 4 17 2.2 1.5e+02 3.3 2.2 1 12 171 182 171 185 0.89 5 17 8.8e-06 0.0006 20.2 0.1 2 23 189 210 188 210 0.97 6 17 3.9e-05 0.0026 18.2 5.8 1 23 216 238 216 238 0.97 7 17 0.00034 0.023 15.3 1.3 1 23 244 266 244 266 0.98 8 17 0.0054 0.36 11.5 0.2 1 23 275 297 275 297 0.93 9 17 0.001 0.068 13.8 0.9 1 20 438 457 438 458 0.94 10 17 4.6e-08 3.1e-06 27.4 3.9 1 23 473 495 473 495 0.98 11 17 2.6e-07 1.7e-05 25.1 2.1 1 23 501 523 501 523 0.99 12 17 7.4e-06 0.0005 20.5 3.5 1 23 529 551 529 551 0.99 13 17 1.5e-07 1e-05 25.8 1.1 1 23 561 583 561 583 0.98 14 17 2.6e-06 0.00018 21.9 4.6 1 23 589 611 589 611 0.99 15 17 1.4e-07 9.4e-06 25.9 2.5 1 23 617 639 617 639 0.97 16 17 0.00091 0.062 13.9 4.9 2 23 646 667 645 667 0.97 17 17 6.2e-06 0.00042 20.7 5.7 1 23 673 695 673 695 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTGAGCTGTGTGAAAATCAAGCTGGAGCAAGATCAGGAGACGCTGCTAATGGATTCAGTCTCAGAGGACGCCAGCTGTGCCCAGCTAAAAACTGAAAGCAATTTTACGGAGATGGACATAGGACCCATCAAAATAGATCCGGATGCGACTGCAGTGTGCCAGGGACAGGCAGCTGCCGGCAACGTACGGGATCGGCGAAAAAAGCAAAGACCTGCCGCAACACTGGAGGATTACAGACTGCCCAAGGGACCGCATCAGTGCCCACACTGTCCACGGCATTTTGAAAGAAGCGATGAACTAACAATACACCTGCAGATCCACACAGATAAATTGCCCTACAAGTGCGTCTATTGTCCGAGCAGTTTTTCCCACAAATCGATTTACACCACGCACATGTACGGACATACGGGCAAATTTCCGCACCAGTGCCCGGACTGTCCGCAGGGCTTTCTGAAATACGGCGATCTCAAGAAGCATCGACGCACGcatattgataaaaatgcatttaaatgtccGTTGTGTCCCAGAAATTGCACACACACGGGCAAAGGCATACTGCAGTGCCCGCAGTGTCCGCGTGGCTTTACGAAGAGCTACGAGCTGGAAATTCATCTTCAGATTCATAGCGATAAGTTGCCCTACAAGTGTCCACACTGCCCCAATAGTTTTGCCCACAAATCGAACTTTAAGGCGCATGTCTGTGAGCATACGGGCGAGTTTCCATTCAGATGCCGATACTGCCCGCGGGGCTTTATGAAGCGGAGCGATTTGTTGAACCACGCGTATACGCACAGCGAGCATACGGACGAGCTGCCATTCAGATGCCCTTATTGTCCACAAAGCTTTCTGGCCCAAAATGATCTGGAAAAACACTCAGATATTCATAGAGCTAAGATTTCGCAAAACTATCGTAACAAAATGGGCTCTAAATCGGGCTTAAAAAGCCACAAAGACAATGCACATAAAGAAATCATAGACATTAGCTGTATCAAAAAAGAGCGGGCGGAGCTAAGTGAATCCCTTCCGAAGCAACCCCAAGTCGAGTCCAAAGCTAAAAACGATCCGTCTATTGGCAAAACAGTCGAAACGCCAGAGCTAATAGCTCCCGACCACATAAAAGTGGAGCCCGGAGCGGACGACAGCGGTGCAATAGGCTCCACGGCGGAGTACAGTGCCTTAGATAAGTCCGATAGTAAATGTGATTTGGCTGAGAGCAATATTATGCTGGGCCCCATCAAAATAGAACCGGATGAGAGCAGGCCGCCGGAGGAACAGACTTTAGTAAATGTGCGCTCAAAGCGAGGCTATAAATGCAAAGTTTGTAGCAAGACATTCAAGGAAATAAAAGAGTTGCGCCTGCACGAAAAATGCTACACACACTCAAGCAGGCAGACGACAGGCAATCGGCCGTATAAATGCGAGCATTGCTCAAAGACTTTCACACAGTCGTACAACCTGACGGTGCACATGCGCGGCCATACGGGTGAGCGGCCATACAAATGCCCGCACTGCACGCGCACATTTATCCAGAGCTCGGGCCTGAAGATACACATACGACAACATTCCGGCGAGCGGCCATATAAGTGCGCCCATTGTCCGCGCACGTTTGCCAACAACTCGAATCGTAAGAAGCACCTGCAGAGTCATGGCATGGAAGTTGCCAGCGATCTGCCGTACAGGTGTCCGTATTGCCccaaaacttttgcacaaaACTCACATTTCATTGTGCACGTACGTGGACACACCGGCGAACGGCCCTATCAATGCACCTATTGCACCAAGGGCTTCAAGGTCAGTCACGATCTGAAGAAGCATCTGCGCAGCCATACGGGCGAGCGTCCATATGCGTGTCCGCATTGTGACAAAACCTTTGCGCAGAACTCGCATTTCAATGCCCATCTACGTGGCCATGCCAGCGAACGACCATTGAAGTGCACACACTGTCCGCGCACCTTTCTCAAAGCCTACAACCTCAAGGTGCATCTGTGCACCCATACTGGAGAGCGGCCCTACAAGTGTCCACACTGTCCGAAAACCTTTACCCAAAACTCCTACTGCAAGGCGCATATGCGTGAGCatatgaaatga
- Protein Sequence
- MEVSCVKIKLEQDQETLLMDSVSEDASCAQLKTESNFTEMDIGPIKIDPDATAVCQGQAAAGNVRDRRKKQRPAATLEDYRLPKGPHQCPHCPRHFERSDELTIHLQIHTDKLPYKCVYCPSSFSHKSIYTTHMYGHTGKFPHQCPDCPQGFLKYGDLKKHRRTHIDKNAFKCPLCPRNCTHTGKGILQCPQCPRGFTKSYELEIHLQIHSDKLPYKCPHCPNSFAHKSNFKAHVCEHTGEFPFRCRYCPRGFMKRSDLLNHAYTHSEHTDELPFRCPYCPQSFLAQNDLEKHSDIHRAKISQNYRNKMGSKSGLKSHKDNAHKEIIDISCIKKERAELSESLPKQPQVESKAKNDPSIGKTVETPELIAPDHIKVEPGADDSGAIGSTAEYSALDKSDSKCDLAESNIMLGPIKIEPDESRPPEEQTLVNVRSKRGYKCKVCSKTFKEIKELRLHEKCYTHSSRQTTGNRPYKCEHCSKTFTQSYNLTVHMRGHTGERPYKCPHCTRTFIQSSGLKIHIRQHSGERPYKCAHCPRTFANNSNRKKHLQSHGMEVASDLPYRCPYCPKTFAQNSHFIVHVRGHTGERPYQCTYCTKGFKVSHDLKKHLRSHTGERPYACPHCDKTFAQNSHFNAHLRGHASERPLKCTHCPRTFLKAYNLKVHLCTHTGERPYKCPHCPKTFTQNSYCKAHMREHMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00551015;
- 90% Identity
- iTF_00506249;
- 80% Identity
- -