Basic Information

Insect: Drosophila kanekoi
Gene Symbol: -
Assembly: GCA_037075305.1
Location: JBAMCE010000329.1:573537-575751[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.3e-05 0.00085 19.7 3.3 1 23 87 109 87 109 0.98

2 17 0.0097 0.64 10.7 3.1 1 23 115 137 115 137 0.96

3 17 0.00017 0.011 16.1 1.6 1 23 143 165 143 165 0.98

4 17 2.1 1.4e+02 3.3 2.2 1 12 171 182 171 185 0.89

5 17 8.7e-06 0.00058 20.2 1.0 2 23 189 210 188 210 0.97

6 17 3.8e-05 0.0025 18.2 5.8 1 23 216 238 216 238 0.97

7 17 0.0044 0.29 11.7 2.7 1 23 244 266 244 266 0.97

8 17 0.04 2.7 8.7 0.4 1 23 275 297 275 297 0.92

9 17 0.042 2.8 8.6 0.3 1 19 438 456 438 458 0.90

10 17 4.5e-08 3e-06 27.4 3.9 1 23 473 495 473 495 0.98

11 17 2.5e-07 1.7e-05 25.1 2.1 1 23 501 523 501 523 0.99

12 17 9e-07 6e-05 23.3 3.4 1 23 529 551 529 551 0.99

13 17 3.4e-07 2.2e-05 24.7 2.4 1 23 561 583 561 583 0.98

14 17 6e-06 0.0004 20.7 3.6 1 23 589 611 589 611 0.99

15 17 1.9e-06 0.00012 22.3 2.1 1 23 617 639 617 639 0.97

16 17 0.00018 0.012 16.1 3.7 2 23 646 667 645 667 0.97

17 17 1.8e-05 0.0012 19.2 6.9 1 23 673 695 673 695 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.3e-05	0.00085	19.7	3.3	1	23	87	109	87	109	0.98
2	17	0.0097	0.64	10.7	3.1	1	23	115	137	115	137	0.96
3	17	0.00017	0.011	16.1	1.6	1	23	143	165	143	165	0.98
4	17	2.1	1.4e+02	3.3	2.2	1	12	171	182	171	185	0.89
5	17	8.7e-06	0.00058	20.2	1.0	2	23	189	210	188	210	0.97
6	17	3.8e-05	0.0025	18.2	5.8	1	23	216	238	216	238	0.97
7	17	0.0044	0.29	11.7	2.7	1	23	244	266	244	266	0.97
8	17	0.04	2.7	8.7	0.4	1	23	275	297	275	297	0.92
9	17	0.042	2.8	8.6	0.3	1	19	438	456	438	458	0.90
10	17	4.5e-08	3e-06	27.4	3.9	1	23	473	495	473	495	0.98
11	17	2.5e-07	1.7e-05	25.1	2.1	1	23	501	523	501	523	0.99
12	17	9e-07	6e-05	23.3	3.4	1	23	529	551	529	551	0.99
13	17	3.4e-07	2.2e-05	24.7	2.4	1	23	561	583	561	583	0.98
14	17	6e-06	0.0004	20.7	3.6	1	23	589	611	589	611	0.99
15	17	1.9e-06	0.00012	22.3	2.1	1	23	617	639	617	639	0.97
16	17	0.00018	0.012	16.1	3.7	2	23	646	667	645	667	0.97
17	17	1.8e-05	0.0012	19.2	6.9	1	23	673	695	673	695	0.98

Sequence Information

Coding Sequence: ATGGACGTGAACTGTGTGAAAATCAAGCAGGAGCAAGATCAGGAGACGCTTCTAATGGATTCAGTCTCGGAGGACGCTAGCTGTGCCCAGCTAAAAACTGAATGCAATTTTACGGAGATGGACATAGGACCCATCAAAATAGATCCGGATGCGACTGCAGTGCGTCAGGAACAGCCAGTTGCCGGCAACGTAAGGGATCGGCGAAAAAAGCAAAGACCTGCCGCAACACTGGAGGATTACAGACTGCCCAAGGGAGCCCATCAGTGCCCGCACTGTCCACGGCACTTCGAAAGAAGCGACGAACTCTCAATACACCTGCAGATCCACACAGATAAATTGCCGTACAAGTGCGTCTACTGTCCGAGCAGTTTTTCCCATAAGTCGATTTACACCACGCACATGTACGGACATACTGGCAAATTTCCGCACCAGTGCCCGGACTGTCCGCAGGGTTTCCTGAAATACGGCGATCTCAAGAAGCATCGACGCACGCATATtgataaaaatgcatttaaatgtccTCTGTGCCCCAGAAATTGCACACACACGGGAAAAGGTATACTGCAGTGCCCGCAGTGTCCGCGTTGCTTTACGAAGAGCTTCGAGCTGGAAATTCATCTTCAGATTCATAGCGACAAGCTGCCCTACAAGTGTCCGCACTGCCCGAACAGCTTTGCACACAAGTCGAACTTCAAAGCGCATGTCTGTGAGCATACGGGTGACTTTCCATTCAGATGCCGATACTGCCCACGGGGCTTTATGAAGAGGAGCGATTTCTTGAACCACTCGTATACTCACAGCGAGCATACGGAGGAGCTGCCATTCAGATGTCAATATTGCCCGCAGAGCTTTCTGGCGGAAAATGATCTGCAGAAGCACTCAGATGTTCACAGAGATAAGATTTCGCAAAACTATCGCAACAAAATGGGCTCTAAATCAGGATTAAAGCGCCACAAAGACGATGCGCATAAAGAGATCATAGACGTAAGCTGTATCAAAAAAGAGCTGGCGGAGCCAAGCGAATCCCTTGCGGTACAACCCCAAGTCGAGCTCGAAGCTAAGTCCGATACGTCTATCAGCCAAACTGTCGAAACGCCAGAACTCATAGCTCCCGATCGCATAAAAGTGGAGCCCGGAACGGAGGACAGCGGTGTCATAGGCTCTACGGCGGACAACAGTGCCTTAGATAAGTCCGACAGTAAAAATGATTTGGCTGAGAGCAATATTGTGCTGGGCCCCGTCAAAATAGAACCGGATGAGAGCAGGCCGCCGGAGGAACAGACTTTAGAAAGCGTGCGCTCAAGGCGTTGCTATAAATGCAAAGTTTGCAGCAAGGCATTCCTGGACATAAAAGAGCTGCGCCTCCACGAAAAATgctacacacactcaagcagGCAGACGACAGGCAATCGGCCGTATAAATGCGAGCACTGCTCAAAGACTTTCACCCAGTCGTACAACCTGACGGTGCACATGCGCGGCCATACGGGTGAGCGGCCATACAAATGCCCGCACTGCACGCGCACATTTATCCAGAGCTCGGGCCTAAAGATACACATACGACAACATTCCGGCGAACGGCCATATAAGTGTCCCCATTGTCCGCGCACATTTGCCAACAACTCGAATCGTAAGAAGCACCTGCAGAGTCATAGCATGGAGCTTGCCAGCGATCTGCCGTACAGGTGTCCGCATTGTCCCAAAACGTTTGCGCAAAACTCACATTTCATAGTGCACGTACGTGGCCACACCGGCGAACGGCCCTTTCAATGCGCCTATTGCACCAAGGGCTTCAAGGTCAGTCACGATCTGAAGAAGCATCTGCGCAGCCATACGGGCGAGCGTCCATATGCGTGTCCGCATTGTGCCAAAACCTTTGCGCAGAACTCGCACTTCAATGCCCATCTACGTGGCCATGCCAGCGAACGGCCATTGAAGTGCCCCCACTGTCCGCGCACCTTTCTGAAAGCCTACAATCTCAAGGTGCATCTGTGCACCCATACCGGGGAGCGGCCGTACAAGTGTCCACACTGTCCAAAAACCTTCACCCAAAACTCTTACTGCAAGACGCATATGCGTGAGcacatgaaatga
Protein Sequence: MDVNCVKIKQEQDQETLLMDSVSEDASCAQLKTECNFTEMDIGPIKIDPDATAVRQEQPVAGNVRDRRKKQRPAATLEDYRLPKGAHQCPHCPRHFERSDELSIHLQIHTDKLPYKCVYCPSSFSHKSIYTTHMYGHTGKFPHQCPDCPQGFLKYGDLKKHRRTHIDKNAFKCPLCPRNCTHTGKGILQCPQCPRCFTKSFELEIHLQIHSDKLPYKCPHCPNSFAHKSNFKAHVCEHTGDFPFRCRYCPRGFMKRSDFLNHSYTHSEHTEELPFRCQYCPQSFLAENDLQKHSDVHRDKISQNYRNKMGSKSGLKRHKDDAHKEIIDVSCIKKELAEPSESLAVQPQVELEAKSDTSISQTVETPELIAPDRIKVEPGTEDSGVIGSTADNSALDKSDSKNDLAESNIVLGPVKIEPDESRPPEEQTLESVRSRRCYKCKVCSKAFLDIKELRLHEKCYTHSSRQTTGNRPYKCEHCSKTFTQSYNLTVHMRGHTGERPYKCPHCTRTFIQSSGLKIHIRQHSGERPYKCPHCPRTFANNSNRKKHLQSHSMELASDLPYRCPHCPKTFAQNSHFIVHVRGHTGERPFQCAYCTKGFKVSHDLKKHLRSHTGERPYACPHCAKTFAQNSHFNAHLRGHASERPLKCPHCPRTFLKAYNLKVHLCTHTGERPYKCPHCPKTFTQNSYCKTHMREHMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00551015;
90% Identity: iTF_00506249;
80% Identity: -