Dmim003280.2
Basic Information
- Insect
- Drosophila mimetica
- Gene Symbol
- bab1
- Assembly
- GCA_037075245.1
- Location
- JBAMCH010000004.1:29699145-29701177[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-17 1.9e-14 53.2 0.0 1 43 55 98 55 100 0.95 2 2 2.5 3.9e+03 -2.2 0.2 17 23 207 213 201 221 0.57
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCACGCCTGGATGGGCGCCACCGGATCCACGCTGGCAGCAGACAGCTACCAGTACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACCAACCAGAACCTGATGCACCACATGCGCTTCCGCGAGCGCGGCCCTCTGAAGTCCTGGCGCCCCGAGACGATGGCCGAGGCCATCTTCAGTGTGCTGAAGGAGGGTCTCTCGCTGTCGCAGGCCGCCCGCAAGTACGACATCCCGTACCCCACGTTCGTGCTCTACGCGAACAGGGTTCACAACATGCTGGGGCCCTCCATCGACGGCGGCCCGGACCTGCGGCCCAAGGGGCGCGGCCGACCGCAGAGAATCCTGCTCGGCATCTGGCCCGACGAGCACATCAAGGGCGTCATCAAGACGGTGGTCTTCCGCGACACCAAGGACATCAAGGACGATAGCCTGGCGGCTCACATGCCGCCCTACGGCCGACATTCGCCCGCGTTTCCCTTGCAGGACCTTCCCCTGAGCTACCCCGGCGCGAGTGGCGCCCTGGCTGGAGCGCCCAGCTCGATGGCCTGCCCGAACGGCAGCGGGCCGCAGGCCGGAGTGGGCGGGGTGGCTGGTGAGCAGCACATGTCGCAGGAAACTGCCGCTGCGGTGGCCGCAGTGGCCCACAACATCCGGCAGCAGATGCAAATGGCAGCGGCCGTGCAGCATCAGCACGGGGAGGCGGGACCACCGCCCGTTCCGCCCGGCCTGTTCAATCTGCCGCCCCACCCCGGCGTGGGCGGGGTGGGGGTGCCTGGAGCGGGCGGAGGCAGGGCCAGCATATCGCCGGCCCTGAGCAGCGGCTCAGGGCCCAGGCATGCACCTTCGCCATGCGGTCCCGCTGGCCTCCTGCCGAATCTGCCGCCCAGCATGGCCGTTGCcctgcaccaccagcagcagcagcagcagcaacaggctgCGCACCATCATCTGCAGCAGCTccacctgcagcagcagcagcaggcgcacatgcaccaccaccagcagcagcagcagcaccatcaGGGCGGCCACCAGGTGCCGCACAAGTCCGGTTTCGGCGCCAGCTCCAGTTCCtcagcctcctcctcctcgctgggCCAGCACCATCCCTCCTCCAAGGCCAAGGGCAGTCCCCTGCGCAGCGAAACCCCGCGGCTCCACTCCCCGCTCGGCGACCTGGGCCTGGACATGGCCGGCTACAAGCGGGAGTTCTCGCCCAGTCGCCTCTTCGCCGAGGATCTGGCCGAGCTGGTGGGCGCCAGtgtctcctcctcctcctcctcggcggcAGCGGGAGCAGCTCCTCCAGAGAGATCAGCCGCAGGATCATCCCAGGCAGCGGGCACCGATGCGCCCAGTTCCTCGAGCAGTGGCGGCATCAAAGTGGAACCCATTACCACCACGAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDIKDDSLAAHMPPYGRHSPAFPLQDLPLSYPGASGALAGAPSSMACPNGSGPQAGVGGVAGEQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPPVPPGLFNLPPHPGVGGVGVPGAGGGRASISPALSSGSGPRHAPSPCGPAGLLPNLPPSMAVALHHQQQQQQQQAAHHHLQQLHLQQQQQAHMHHHQQQQQHHQGGHQVPHKSGFGASSSSSASSSSLGQHHPSSKAKGSPLRSETPRLHSPLGDLGLDMAGYKREFSPSRLFAEDLAELVGASVSSSSSSAAAGAAPPERSAAGSSQAAGTDAPSSSSSGGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00604767; iTF_00515521; iTF_00533026; iTF_00571822; iTF_00543055; iTF_00536689; iTF_00581457; iTF_00529490; iTF_00477943; iTF_00482905; iTF_00606234; iTF_00480093; iTF_00511931; iTF_00494311; iTF_00578459; iTF_00578457; iTF_00481470; iTF_00579907; iTF_00538884; iTF_00487926; iTF_00566007; iTF_00615492; iTF_00503915; iTF_00614832; iTF_00545892; iTF_00550181; iTF_00477266; iTF_00588062; iTF_00593760; iTF_00525807; iTF_00489300; iTF_00485061; iTF_00491436; iTF_00612736;
- 90% Identity
- iTF_00581457;
- 80% Identity
- -