Dbip002088.1
Basic Information
- Insect
- Drosophila bipectinata
- Gene Symbol
- bab1
- Assembly
- GCA_018153845.1
- Location
- JAECYF010000001.1:10681343-10682912[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-18 1.6e-14 53.2 0.0 1 43 55 98 55 100 0.95 2 2 7 1.4e+04 -4.3 1.0 6 13 209 216 208 218 0.83
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCTCACGCCTGGATGGGTGCCACTGGATCTACGCTGGCAGCAGACAGCTACCAATACCAGTTACAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAGAACCTGATGCATCATATGCGCTTCCGCGAGCGAGGTCCTCTCAAGTCCTGGCGACCCGAGACCATGGCCGAGGCCATCTTCAGTGTACTGAAAGAGGGCCTCTCTCTGTCGCAGGCCGCCCGCAAATACGACATTCCGTATCCCACTTTCGTCCTGTACGCCAATCGGGTGCACAACATGTTGGGACCATCGATCGATGGTGGGCCGGATCTGCGGCCCAAGGGGCGGGGCAGGCCACAGCGGATTCTGCTGGGCATTTGGCCGGACGAGCATATTAAGGGTGTTATCAAGACGGTGGTGTTCCGGGACGCCAAGGACATTAAAGACGACAGCATCGGCTCCCATTTGCCGCCCTACGGACGTCACTCGCCCGTGTTTCCCCTGCAGGACCTCTCCCTGAGCTATCCTGGCGCGAGTGGCGCCCTGGCCGCGCCGCCCAGCTCCCTGGCCTGTCCGAACGGCAGCGGTCCTCAAGGCGGGGTTGGAGGAGAGCCGCACATGTCGCAGGAGACTGCCGCAGCGGTGGCCGCCGTGGCGCACAACATCCGGCAGCAGATGCAGATGGCCGCGGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCGCCCGTTCCACCCGGCCTGTTCAACCTGCCCCCTCATCCGGGGGTGGGCTCGGTGGCCGTTCCGGGATCGGGTGGAGGCAGGGCCAGCATATCGCCGGCCTTGAGTAGTGGCAGTGGTCCGCGTCACGCGCCCTCGCCCTGCGGTCCCGCTGGCCTGTTGCCGAATCTGCCGCCCAGCATGGCCGTCGCTCTGCACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCCCCACAAATCCGTCGGCGGTAGTGGTGGTGGTGCTGGTGGTTTCGGTGCCAGTTCCTCCTCTCAATCCTCGACCCATCCCTCCAAGGCCAAGGGAAGTCCTCTGCGCAGCGAAACCCCCCGGCTGCACTCTCCACTCGGCGATCTCGGCCTGGACATGGCCGGCTACAAGAGGGACTTTTCGCCCAGTCGACTCTTTGCCGAAGATCTGGCCGAACTTGTCGGCGCCAGTGTCTCGTCCTCCTCATCCTCCCAGGCAGCTGCAGCCGGTGCAGGGGCCGGAATTGATAGATCCGGAGCGGGATCCTCTGGAGTGGATGCCCCCAGTTCTTCGAGTGCTGCGCCAGGAGCCATCAAGGTGGAGCCCATCACCACGACTAGCGAGTAA
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDIKDDSIGSHLPPYGRHSPVFPLQDLSLSYPGASGALAAPPSSLACPNGSGPQGGVGGEPHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPPVPPGLFNLPPHPGVGSVAVPGSGGGRASISPALSSGSGPRHAPSPCGPAGLLPNLPPSMAVALHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPHKSVGGSGGGAGGFGASSSSQSSTHPSKAKGSPLRSETPRLHSPLGDLGLDMAGYKRDFSPSRLFAEDLAELVGASVSSSSSSQAAAAGAGAGIDRSGAGSSGVDAPSSSSAAPGAIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00547989;
- 90% Identity
- iTF_00579907;
- 80% Identity
- -