Dlow012069.1
Basic Information
- Insect
- Drosophila lowei
- Gene Symbol
- -
- Assembly
- GCA_008121275.1
- Location
- CM017781.1:18965825-18967363[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7e-17 1.4e-13 50.2 0.0 2 45 343 386 342 386 0.95 2 3 0.0052 11 5.7 0.0 27 37 415 425 411 430 0.90 3 3 8.3e-21 1.7e-17 62.7 0.0 2 44 452 494 451 495 0.96
Sequence Information
- Coding Sequence
- ATGGGGCACTCGTCCACAATAATGGACCTACAACGCTCTCTGCGCAACGATATCCAAACATGCGAGGTTGTGCTGGCCGCCAAAGACGGCTTCAGTGTACGCGCCCATTCCTTCGTGCTCAGCACATGCAGCGACCTGATGCGGAATCTCCTGGTGGATGTTCCGCCGGGCTTTGAAGCCACCATAGTGCTGCCCGATGTCCGAGGCGAACTGCTGGAAAGTATGTTGTCGTTCATCTATATGGGCGAAACAGCCCTGCCCTCGGTGCTGCTCAGCGAGTTTCTGGAGGCTATCAACCTATTGGGAATCAAATCCGCCATTAGCTTCGAGTGCAATGCCTCCTCTAACGTGGACGTAGGCGCTAGCGCTTTGGCGGTGGAGGCAGCTAAATCAATCAGCGGCCTGCAAATCGCTCAAGCCGAGCTGATtgaagaagaggaggaggaggaggagggacaGACACAGATGGCTGTGGCAGACGCAGTCATGGCGGAAGAACAGCCGCATCAGCCATCACACACCAGCCGTCCGCTGCAGTTTCTCGATGTGTACAACGAGACGCCAAAGATCACCTACTCCATTGAGCACATGGGCGGCCACTCGAGCGGAAATCAGTTTATTCTAACCGAGAATACGGGAGCATTTACAATCACACAGTCGGCGTCCAGTTTGTCCAAGCTGGAGACCTCCGAAAATGCCACCAGTGTCGGCGAGGTGGATATGGCAGAAGATGACGCGGAAGCTGATGCTGATACCATAGAGGAGCCCGAAACACAAATACTCGAGGAGGAATATCCCTCAGATCCCTTGACTGAGATGGGAGCGGATGCCGATTTGGACGACGATGAAATGCACGAGGATCTGGTAGATGAGGAGATGCTGGAAGTGAAGCCGCGCAAACTGGCCGTGGCCAAGCCGAGAGGCCGACGCCCCAATCGAACAAAGATTATGAAGCGAACGCCGCCcagacaacagcaacagcaggagcagttTCTCAACCTCAAAGCAGAAGGCAAAGATGACATTAACGATGCCCTGGATCTCGCGGCGGATGCCGTGATACTCGAGGGACTAAGTCTGCAAAAGGCTGCCGATCGTTATGACATTTCGAAGACGGTTTTGTGGCGTCGTGTGCGCACCAACCCCGCGTATATGCGAAGTAACCGCGAGAGACCATCATTGTCTGAAGCGTACGAAAGACTTAAAACCGGCGACTCGTTAAAGAGCATCAGCCAGGATCTGGGGATACCCATGTCAACCTTACATCGACACAAAGTTCGACTGTCGGCGCAGGGTCGCCTGCCTGAGTTTGTGGCTTGCCGCCGCCGTGACACTACCCCCAAGGACGAGCTTCGCGAGAAACTGGCCAAGGCCGTCCATGCCTGCATGAACGAGGGAATGTCGCAGAACCATGCGGCGAATCTGTTCGAGATACCCAAGAGCACACTCTGGCGGCACCTTCAGCGTCGCATGTCCGCCTCGGAAAGAAAGGTAAAGAAGGAGGAACAGGATGACTATGATGAGGAGATACTGAACTAG
- Protein Sequence
- MGHSSTIMDLQRSLRNDIQTCEVVLAAKDGFSVRAHSFVLSTCSDLMRNLLVDVPPGFEATIVLPDVRGELLESMLSFIYMGETALPSVLLSEFLEAINLLGIKSAISFECNASSNVDVGASALAVEAAKSISGLQIAQAELIEEEEEEEEGQTQMAVADAVMAEEQPHQPSHTSRPLQFLDVYNETPKITYSIEHMGGHSSGNQFILTENTGAFTITQSASSLSKLETSENATSVGEVDMAEDDAEADADTIEEPETQILEEEYPSDPLTEMGADADLDDDEMHEDLVDEEMLEVKPRKLAVAKPRGRRPNRTKIMKRTPPRQQQQQEQFLNLKAEGKDDINDALDLAADAVILEGLSLQKAADRYDISKTVLWRRVRTNPAYMRSNRERPSLSEAYERLKTGDSLKSISQDLGIPMSTLHRHKVRLSAQGRLPEFVACRRRDTTPKDELREKLAKAVHACMNEGMSQNHAANLFEIPKSTLWRHLQRRMSASERKVKKEEQDDYDEEILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611273;
- 90% Identity
- iTF_00536167; iTF_00480966; iTF_00473701; iTF_00471752; iTF_00471534; iTF_00480784; iTF_00473914; iTF_00574731; iTF_00580872; iTF_00580634; iTF_00574942; iTF_00484542; iTF_00484365; iTF_00517631; iTF_00517841;
- 80% Identity
- iTF_00536167;