g17262.t1
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- -
- Assembly
- GCA_009870125.2
- Location
- CM020872.1:65222439-65223986[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.9e-17 1.8e-13 50.1 0.0 2 45 346 389 345 389 0.95 2 3 0.0052 12 5.9 0.0 27 37 418 428 412 433 0.89 3 3 8.5e-19 1.9e-15 56.4 0.0 2 43 455 496 454 497 0.95
Sequence Information
- Coding Sequence
- ATGGGGCACTCGTCCACAATAATGGACCTACAACGCTCTCTGCGCAACGATATCCAAACATGCGAGGTTGTGCTGGCCGCCAAAGACGGCTTCAGTGTACGCGCCCATTCCTTCGTGCTCAGCACATGCAGCGACCTGATGCGGAATCTCCTGGTGGATGTTCCGCCGGGCTTTGAGGCCACCATAGTGCTGCCCGATGTCCGAGGCGAACTGCTGGAAAGCATGTTGTCGTTCATCTATATGGGCGAAACAGCCCTGCCGTCGGTGCTGCTCAGCGAGTTTCTAGAGGCTATCAACCTATTGGGCATCAAATCCGCCATTAGCTTCGAGTGCAATGCCGCCTCTAATGTGGACCTAGGCGCTAGCGCTTTGGCGGTGGAGGCAGCTAAATCAATCAGTGGCCTGCAAATCGCTCAAGCCGAGCTGATtgaagaagaggaggaggaggaggaggcacagacacagatggCTGTGGCAGACGCAGTCCTGACGGAAGAACAGCCGCATCAGCCAACACACACCAGCCGTCCGCTGGAGTTTCTCGATGTGTACAACGAGACGCCAAAGATCACGTACTCCATTGAGCACATGGGCGGCCACTCGAATGGCAATCAGTTTATTCTAACAGAGAATACGGGAGCGTTTACAATCACACAGTCGGCGTCCAGTTTGTCCAAGCTGGAGACCTCTGAAAATGCCACCAGTGCCGGCGATGTGGATATGGCGGAAGATGACGCGGAAGCTGATGGTGATACCAACATAGAGGAGCCCGAAACACAAATACTCGAGGAGGAATATCCCTCAGATCCCTTGACTGAGATGGGAGCGGATGCCGATTTAGACGACGATGAAATACACGAGGATCTGGTAGATGAGGAGCTGCTGGATGTGAAACCGCGTAAATTGGCTGTGGCCAAGCCGAGAGGCCGACGCCCCAATCGAACGAAGATTATGAAGCGAACGCCGCccaggcaacagcaacagcaacagcaggagcagttTCTCACCCTCAAAGCAGAAGGAAAAGATGACATTAACGATGCCCTGGATCTCGCGGCCGACGCCGTGATACTCGAGGGACTAAGTCTGCAAAAGGCTGCCGATCGTTATGACATTTCGAAGACGGTTTTGTGGCGTCGTGTGCGCACCAACCCCGCGTATATGCGAAGTAACCGCGAGAGACCATCATTGTCTGAAGCGTACGAAAGACTTAAAGTCGGCGACTCGTTAAAGAACATCAGCCGGGATCTGGGGATACCCATGTCAACCCTACATAGACACAAAGTTCGACTGTCGGCGCAGGGTCGCCTGCCTGAGTTTGTGGCTTGCCGCCGCCGTGACACTACCCCCAAGGACGAGCTTCGCGAGAAACTGGCCAAGGCCGTCCATGCCTGCATGATTCAGGGAATGTCGCAGAACCATGCGGCGAATCTGTTCGAGATACCCAAGAGCACACTCTGGCGGCACCTTCAGCGCCGCATGTCCGCCGCGGAAAGAAAGGTAAAGAAGGAGGAACAGGACGACTATGATGAAGAGATACTGAACTAG
- Protein Sequence
- MGHSSTIMDLQRSLRNDIQTCEVVLAAKDGFSVRAHSFVLSTCSDLMRNLLVDVPPGFEATIVLPDVRGELLESMLSFIYMGETALPSVLLSEFLEAINLLGIKSAISFECNAASNVDLGASALAVEAAKSISGLQIAQAELIEEEEEEEEAQTQMAVADAVLTEEQPHQPTHTSRPLEFLDVYNETPKITYSIEHMGGHSNGNQFILTENTGAFTITQSASSLSKLETSENATSAGDVDMAEDDAEADGDTNIEEPETQILEEEYPSDPLTEMGADADLDDDEIHEDLVDEELLDVKPRKLAVAKPRGRRPNRTKIMKRTPPRQQQQQQQEQFLTLKAEGKDDINDALDLAADAVILEGLSLQKAADRYDISKTVLWRRVRTNPAYMRSNRERPSLSEAYERLKVGDSLKNISRDLGIPMSTLHRHKVRLSAQGRLPEFVACRRRDTTPKDELREKLAKAVHACMIQGMSQNHAANLFEIPKSTLWRHLQRRMSAAERKVKKEEQDDYDEEILN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611273;
- 90% Identity
- iTF_00535964;
- 80% Identity
- iTF_00580872;