Daff013660.1
Basic Information
- Insect
- Drosophila affinis
- Gene Symbol
- -
- Assembly
- GCA_037356375.1
- Location
- CM074802.1:53642479-53644020[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.5e-17 1e-13 51.1 0.0 2 45 344 387 343 387 0.95 2 3 0.021 48 4.1 0.0 27 37 416 426 413 431 0.89 3 3 5.3e-19 1.2e-15 57.2 0.0 2 42 453 493 452 495 0.94
Sequence Information
- Coding Sequence
- ATGGGGCACTCGTCCACAATAATGGACCTACAACGCTCTCTGCGCAACGATGTCCAAACATGCGAGGTTGTGCTTGCCGCCAAAGACGGCTTCAGTGTACGCGCGCATTCCTTCGTGCTCAGTACATGCAGCGATCTGATGCGGAATCTCCTGGTGGATGTCCCGCCAGGCCATGAAGCCACCATAGTGCTGCCCGATGTTCGGGGCGAACTGCTGGAAAGTATGTTGTCGTTCATCTACATGGGTGAAACAGCCCTGCCCTCGGTGTTGCTCAGCGAATTTCTGGAGGCTATCAACCTATTGGGCATCAAATCCGCCATTAGCTTCGAATGTAATGCCTCCTCTAACGTGGACGTGGGCGCTAGCGCTTTGGCGGTGGAGGCAGCTAAATCAATCAGCGGCCTGCAGATTGCCCAAGCCGAGCTGATTGAAGAGGAGGATGACGAGGAGGGGCAGGCACAGATGGCTGTGGCAGCCGCAGTCCTGTCGGAAGAACAGCCCCATCAGTCAGCACACACCACCCGTCCGCTGGGGTTTCTCGATGTTTACAATGAGACGCCAAAGATTACGTATTCCATTGAGCACATGGGCGGCAACTCGAACGGCAATCAGTTTATTCTAACCGAGAATACGGGAGCATTTACAATCACACAGTCGGCGTCTAGTTTATCCAAGCTGGAGACCTCAGAAAATGCCACCAGTGGCGGCGAGGTGGACATGGCGGAAGATGACGCGGAAGCGGACGCTGATACCACCGAAGAGGAGCCTGAAACACAAATACTTGAGGAGGAATATCCCTCAGATCCCTTAATTGAGATGGGAGCCGATGCAGATTTGGACGACGATGAGATGAACGAGGATTTGGTGGACGAGGAGATGCTGGAAGTGAAGCCGCGAAAACTGGCTGTGGCCAAACCGAGAGGCCGTCGCCCCAATCGAACAAAGACTGTGAAGCGAACTGCGCccaggcaacagcaacaacaacaaccgaaGTTTCTTACTCTCAAAGCAGAAGGCAAAGATGACATTAACGATGCTTTGGATCTTGCGGCCGACGCTGTAATACTCGAGGGACTTAGTCTGCAGAAGGCAGCCGATCGCTATGACATTTCAAAAACGGTTTTGTGGCGTCGTGTGCGCACAAACCCCTCGTATATGCGAAGCAACCGGGAGAGACCATCATTGTCTGAAGCGTACGAAAGACTTAAAATCGGCGACTCTCTAAAGAGCATCAGCCAGGATCTGAATATACCCATGTCAACCTTACATCGACACAAAGTTCGACTGTCGGCGGAGGGTCGCCTGCCTGAGTTTGTCGCCTGCCGCCGCCGTGACACTACACCCAAGGACGAGCTTCGCGAGAAACTGTCCAAGGCCGTCCATGCCTGCATGAACGAGGGTATGTCGCAGAATCATGCGGCGAATCTGTTTGAAATACCCAAGAGCACACTCTGGCGGCACCTTCAGCGTTGCATGTCCGCAACGGACAGAAAGGTAAAAAAGGAGGAACAGGACGACTACGATGAGGAGATACTGAACTAG
- Protein Sequence
- MGHSSTIMDLQRSLRNDVQTCEVVLAAKDGFSVRAHSFVLSTCSDLMRNLLVDVPPGHEATIVLPDVRGELLESMLSFIYMGETALPSVLLSEFLEAINLLGIKSAISFECNASSNVDVGASALAVEAAKSISGLQIAQAELIEEEDDEEGQAQMAVAAAVLSEEQPHQSAHTTRPLGFLDVYNETPKITYSIEHMGGNSNGNQFILTENTGAFTITQSASSLSKLETSENATSGGEVDMAEDDAEADADTTEEEPETQILEEEYPSDPLIEMGADADLDDDEMNEDLVDEEMLEVKPRKLAVAKPRGRRPNRTKTVKRTAPRQQQQQQPKFLTLKAEGKDDINDALDLAADAVILEGLSLQKAADRYDISKTVLWRRVRTNPSYMRSNRERPSLSEAYERLKIGDSLKSISQDLNIPMSTLHRHKVRLSAEGRLPEFVACRRRDTTPKDELREKLSKAVHACMNEGMSQNHAANLFEIPKSTLWRHLQRCMSATDRKVKKEEQDDYDEEILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611273;
- 90% Identity
- iTF_00535964;
- 80% Identity
- iTF_00471752;