Dper006853.1
Basic Information
- Insect
- Drosophila persimilis
- Gene Symbol
- -
- Assembly
- GCA_003286085.2
- Location
- NW:272826-274740[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.2e-17 1.2e-13 50.1 0.0 2 45 352 395 351 395 0.95 2 3 0.0041 8.1 5.9 0.0 27 37 424 434 418 439 0.89 3 3 6.7e-19 1.3e-15 56.4 0.0 2 43 461 502 460 503 0.95
Sequence Information
- Coding Sequence
- ATGAATCACCTGAAATGGATGGGGCACTCGTCCACAATAATGGACCTACAACGCTCTCTGCGCAACGATATCCAAACATGCGAGGTTGTGCTGGCCGCCAAAGACGGCTTCAGTGTACGCGCCCATTCCTTCGTGCTCAGCACATGCAGCGACCTGATGCGGAATCTCCTGGTGGATGTTCCGCCGGGCTTTGAGGCCACCATAGTGCTGCCCGATGTCCGAGGCGAACTGCTGGAAAGCATGTTGTCGTTCATCTATATGGGCGAAACAGCCCTGCCGTCGGTGCTGCTCAGCGAGTTTCTAGAGGCTATCAACCTATTGGGCATCAAATCCGCCATTAGCTTCGAGTGCAATGCCGCCTCTAATGTGGACCTAGGCGCTAGCGCTTTGGCGGTGGAGGCAGCTAAATCAATCAGCGGCCTGCAAATCGCTCAAGCCGAGCTGATTgaagaagaggaggaggaggaggaggcacagacacagatggCTGTGGCAGACGCAGTCCTGACGGAAGAACAGCCGCATCAGCCAACACACACCAGCCGTCCGCTGGAGTTTCTCGATGTGTACAACGAGACGCCAAAGATCACGTACTCCATTGAGCACATGGGCGGCCACTCGAATGGCAATCAGTTTATTCTAACAGAGAATACGGGAGCGTTTACAATCACACAGTCGGCGTCCAGTTTGTCCAAGCTGGAGACCTCTGAAAATGCCACCAGTGGCGGCGATGTGGATATGGCGGAAGATGACGCGGAAGCTGATGGTGATACCAACATAGAGGAGCCCGAAACACAAATACTAGAGGAGGAATATCCCTCAGATCCCTTGACTGAGATGGGAGCGGATGCCGATTTGGACGACGATGAAATGCACGAGGATCTGGTAGATGAGGAGCTGCTGGATGTGAAACCGCGCAAACTGGCTGTGGCCAAGCCGAGAGGCCGACGCCCCAATCGAACGAAGATTATGAAGCGAACGCCGCccaggcaacagcaacagcaacagcaggagcagTTTCTCACCCTCAAAGCAGAAGGAAAAGATGACATTAACGATGCCCTGGATCTCGCGGCCGACGCCGTGATACTCGAGGGACTAAGTCTGCAAAAGGCTGCCGATCGTTATGACATTTCGAAGACGGTTTTGTGGCGTCGTGTGCGCACCAACCCCGCGTATATGCGAAGTAACCGCGAGAGACCATCATTGTCTGAAGCGTACGAAAGACTTAAAGTCGGCGACTCGTTAAAGAACATCAGCCGGGATCTGGGGATACCCATGTCAACCCTACATAGACACAAAGTTCGACTGTCGGCGCAGGGTCGCCTGCCTGAGTTTGTGGCTTGCCGCCGCCGTGACACTACCCCCAAGGACGAGCTTCGCGAGAAACTGGCCAAGGCCGTCCATGCCTGCATGATTCAGGGAATGTCGCAGAACCATGCGGCGAATCTGTTCGAGATACCCAAGAGCACACTCTGGCGGCACCTTCAGCGCCGCATGTCCGCCGCGGAAAGAAAGGTAAAGAAGGAGGAACAGGACGACTATGATGAGGAGATACTGAACTAG
- Protein Sequence
- MNHLKWMGHSSTIMDLQRSLRNDIQTCEVVLAAKDGFSVRAHSFVLSTCSDLMRNLLVDVPPGFEATIVLPDVRGELLESMLSFIYMGETALPSVLLSEFLEAINLLGIKSAISFECNAASNVDLGASALAVEAAKSISGLQIAQAELIEEEEEEEEAQTQMAVADAVLTEEQPHQPTHTSRPLEFLDVYNETPKITYSIEHMGGHSNGNQFILTENTGAFTITQSASSLSKLETSENATSGGDVDMAEDDAEADGDTNIEEPETQILEEEYPSDPLTEMGADADLDDDEMHEDLVDEELLDVKPRKLAVAKPRGRRPNRTKIMKRTPPRQQQQQQQEQFLTLKAEGKDDINDALDLAADAVILEGLSLQKAADRYDISKTVLWRRVRTNPAYMRSNRERPSLSEAYERLKVGDSLKNISRDLGIPMSTLHRHKVRLSAQGRLPEFVACRRRDTTPKDELREKLAKAVHACMIQGMSQNHAANLFEIPKSTLWRHLQRRMSAAERKVKKEEQDDYDEEILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611273;
- 90% Identity
- iTF_00535964;
- 80% Identity
- iTF_00574942;