Dhel005464.1
Basic Information
- Insect
- Drosophila helvetica
- Gene Symbol
- -
- Assembly
- GCA_963969585.1
- Location
- OZ018401.1:48647547-48649085[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-16 3.2e-13 49.6 0.0 2 45 343 386 342 386 0.94 2 3 0.022 49 4.2 0.0 27 37 415 425 411 430 0.89 3 3 5.2e-20 1.2e-16 60.6 0.0 2 44 452 494 451 495 0.96
Sequence Information
- Coding Sequence
- ATGGGACACTCGTCCACAATAATGGACCTACAACGCTCTCTGCGCAACGATGTCCAAACATGCGAGGTTGTGCTTGCCGCCAAAGACGGCTTCAGTGTACGCGCCCATTCCTTCGTGCTCAGCACATGCAGCGATCTGATGAGGAATCTCCTGGTGGATGTCCCGTCGGGCCATGAAGCCACCATAGTGCTGCCCGATGTCCGGGGCGAACTGCTGGAAAGTATGTTGTCGTTCATCTACATGGGCGAAACAGCCCTGCCTTCGGTGCTGCTCAGCGAATTTCTGGAGGCAATCAACCTATTGGGCATCAAATCCGCCATTAGCTTCGAGTGCAATGCCTCCGCTAACGTGGACGTGGGCGCTAGCGCTTTGGCGGTAGAGGCAGCCAAATCAATCAGCGGCCTGCAGATCGCCCAAGCCGAGCTGAttgaagaggaggaggaggaggagggacaGGCACAGATAGCTGTGGCAGCCGCAGTCTTGTCGGAAGAACAGCCGCATCAGTCAGCACACACCACCCGTCCGCTGGAGTTTCTCGATGTGTACAACGAGACGCCAAAGATCACGTACTCCATTGAGCATATGGGCGGCAACTCGAACGGCAATCAGTTTATTCTAACCGAAAATACGGGAGCATTTACAATCACACAGTCGGCGTCCAGTTTGTCCAAGCTGGAGACCTCCGAAAATGCCACCAGTTGCGGTGAGGTGGATATGGCGGAAGATGACGCGGAAGCAGACGCTGATACCACCGAAGAAGAGCCCGAAACACAAATACTCGAGGAGGAATATCCCTCAGATCCCCTGATTGAGATGGGAGCCGATGCAGATATGGACGACGATGAGATGCACGAGAATCTGGTAGATGAGGAGATGCTGGAAGTGAAACCGCGAAAACTGGCTGTGGCAAAGCCGAGAGGCAGACGCCCCAATCGAACAAAGATCATGAAGCGAAATGCGCccaggcaacagcaacaacaacagcagtttCTCACTCTCAAAACAGAAGGCAAAGATGACATTAACGATGCCCTGGATCTTGCGGCCGACGCCGTAATACTCGAGGGACTTAGTCTGCAGAAGGCTGCCGATCGTTATGACATTTCAAAGACGGTTTTGTGGCGTCGTGTGCGCACAAACCCCGCGTATAGTCGAAGCAACCGCGAGAGACCATCATTATCTGAAGCGTACGAAAGACTTAAAACCGGGCACTCGCTAAAGAGCATCAGCCAGGATCTAAATATACCCATGTCAACCCTACATCGACACAAAGTTCGACTGTCGGCGCAGGGTCGCCTGCCTGAGTTTGTCGCCTGCCGCCGCCGTGACACTACACCCAAGGACGAGCTTCGCGAGAAACTGTCCAAGGCCGTCCATGCCTGCTTGAACGAGGGTATGTCGCAGAATCATGCGGCGAATCTGTTCGAGATACCCAAGAGCACACTCTGGCGGCACCTTCAGCGTCGCATGTCCGCCTCGGACAGAAAGGTAAAGAAGGAGGAACAAGACGACTACGATGAGGAGATACTGAACTAG
- Protein Sequence
- MGHSSTIMDLQRSLRNDVQTCEVVLAAKDGFSVRAHSFVLSTCSDLMRNLLVDVPSGHEATIVLPDVRGELLESMLSFIYMGETALPSVLLSEFLEAINLLGIKSAISFECNASANVDVGASALAVEAAKSISGLQIAQAELIEEEEEEEGQAQIAVAAAVLSEEQPHQSAHTTRPLEFLDVYNETPKITYSIEHMGGNSNGNQFILTENTGAFTITQSASSLSKLETSENATSCGEVDMAEDDAEADADTTEEEPETQILEEEYPSDPLIEMGADADMDDDEMHENLVDEEMLEVKPRKLAVAKPRGRRPNRTKIMKRNAPRQQQQQQQFLTLKTEGKDDINDALDLAADAVILEGLSLQKAADRYDISKTVLWRRVRTNPAYSRSNRERPSLSEAYERLKTGHSLKSISQDLNIPMSTLHRHKVRLSAQGRLPEFVACRRRDTTPKDELREKLSKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRMSASDRKVKKEEQDDYDEEILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611273;
- 90% Identity
- iTF_00535964;
- 80% Identity
- iTF_00517841;