Dlim022192.2
Basic Information
- Insect
- Drosophila limbata
- Gene Symbol
- retn
- Assembly
- GCA_963924055.1
- Location
- OZ001355.1:1434312-1451013[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-26 1.4e-22 80.5 0.0 2 89 351 436 350 436 0.96 2 2 1.3 3.2e+03 -0.8 0.2 6 44 584 627 574 640 0.68
Sequence Information
- Coding Sequence
- ATGCATAAAAAGCAAAGACCGGACCAGCATTCAACGTTGAGTGATGGGGAGCAGCAGCGGGAGGAGTGGGGCAGAGGGGGAGGGGTGTTTCAGCTCCTCGATGGCAAGCGGCCAAGCGTGGCGGACTTCTTAGCCCGAGTCACGGCTGGCAATAGTACGCTTGAAACGGTTTGTGGCCACGGATACGCCATGGATGTAACTTCGTCCCACGGCGATCGAACGGATGACGAGATGAGGGACTGCGATTCCGTCGACGGTGAGCATCATCAGCTGAGCGCCAAGGCGGCGATCGCCGCTCGTCTCAGCCACACAGTCGCCGGCGGTGCTGGCCTCAACTTTGCCAGTCCGGAGCAGCAAACAGATCTGCCACTCAGccatcatcatcagctgCCTCCGAATCATCCGCTGAATGCTCTGGGCAGCTTCATGGGCATCAGTGGACTACACAGCATTCCAAATCTGCAGCACAGCGATGTTCTCGAGAAACTCAAGATGCAAGTGCGCGACATGAAAGTTGGTCTCATGGAACAGGACTACGCAGCAGCGGCACACGCGGCAGCGTTCGGCGCCAACATGTTGCCCACGACGATCAGCTCGGCCTTTCCCCCGCTGCCCCACAACTCGGCGGccgcagcagcggcagcggcgtcCTTTGCCCCCGTGCCGCCTGCCAGCAATGGCGCCAGCTACAATGGTGCGGCAAGTGGAGGAACTAATgctgcagcaggagcagcagctgctgttaGCGCGGCCAGCAATAATGGAGCCAATGGtgggggaggaggaggaggcaacaacaacagtaacagtaacaacaacagcaatgcaGCGAgtggaaacaacaacaacaacaacaatggacaTCCCTTCTCGTTTGCATCGCCAACAGCGCCAAGCGCCAAAGAAGCGCGCCACTTTACAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATTAATGATGATCCCAAACGCAAGGAGTTTCTCGatgatttgttttcatttatgcAGAAGCGCGGCACGCCCATCAATCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTTTACGAACTATACAATTTGGTGATAGCACGCGGCGGCCTCGTCGATGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCCGCATTCACACTCCGCACCCAATACATGAAGTATCTCTACCCGTACGAGTGCGAAAAGAAGAACCTCAGCACCCCGGCCGAGTTGCAGGCGGCCATCGACGGCAATCGTCGTGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCACTGACGCCCATTTCACGTCCACCAATGCCGGGTGGCATGCAACAAATGTCGCCTCTGGCGCTGGTCACACACGCCGCGGCGGCCAACAATCAACAGGCACAGGCAGCGGCGGCCGCGGCGGCGGCGCATCGTCGACTGATGGGCGGACCGGCATTTGGCCAGATGCCCAATCTGGTGACACAGGAGATCGAGAATCGTATGATGGAGTATCTGCAGCTAATACAGGCCAAGAAGGAGCAGAGTGCTGGCCCAGTGCTTGGCGCCACACATCcccaccagcaacagcagcagcaacagtcgcTGCATCatcaccaacagcagcaacagcagcagctacagcagcagcagcaacaacaacagcgacaacgcTCTCAGAGTCCCGAAATGAGCACGCGCGATGCGTTGAGCGCGCAGGTGGCGCTTTGGCATATGTACCACAACAGCAGTCCAACGGGCTCGGCCCACACCTCACCACAACAACGCGAAGCCTTGAACCTTTCCGACTCGCCGCCGAATCTCAATCTGAGTCACATTAAGCGCGAACGCGAACGTGATCCAACTCCCGAGCCGGCGGACCATGAGGATGCACCGCATCAACCGCCACCATCCAAGCGGGTGAGCAGCGGTCTGATGCCACCTGGTTTTCCTGCCAACTTTTACTTGAATCCACACAACATGGCCGCCGTGGCAGCCATTACCCATCATCAccaccatcagcagcagcaacaggacgCGGCGTCTGAAGGCGAGCCGGAGGATGATTACGGAAATGCCGAGCATAATACTACGGGCAATTCATCGTCCATGAACGATGACAATGAGCCACAGCAGCTGAATGGAcatcaccaccaccaccaccaccatcatcatcagaaCCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCACTTCCACAACGGCATCCGCATCCGGCGGACATCGCCACAGCTCGCCGGTGTCCACAAAGAAGAAGAATGCGAGCAGCAGTAAAGCACAGTCGAGTCCCAAGGATGCACAGCACGAGAATGGCACAGCCAATGGCGGCGGTGCCAAGTTAAATCCCCTCGAGACACTCAATCTACTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACTGGCGCCAATGGTGAGCAGCAGTTGATTGTCAAACTGGAGCTGAATGGCATTAAGTACTCGGGTGTCCTGGTCGCCAAtgcagcggcagcagccgCCGCAGCCAGAACAGATCCAAGAGTCGAGGACTCGGACACGGGAAATGCTGCAGCTGCCACGACCGAGGAAGAGGCAACGTCGGAGGAGGAGGCCAACAATGCGGTCAAGCACGATAATAGCCAGGAAGTCGACCAGAACGAGGCAATTGACGAGGAGGAATCGGAACAGCCCACGGATGACATTGTGAATGGAGTGGGCGGTGTTGGCAGGGGGGGAACTGCAGCGGGGGGCGTAACCCTGCTCAAAGATGCTGTGGTCAGTTCGTAG
- Protein Sequence
- MHKKQRPDQHSTLSDGEQQREEWGRGGGVFQLLDGKRPSVADFLARVTAGNSTLETVCGHGYAMDVTSSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGISGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSAFPPLPHNSAAAAAAAASFAPVPPASNGASYNGAASGGTNAAAGAAAAVSAASNNGANGGGGGGGNNNSNSNNNSNAASGNNNNNNNGHPFSFASPTAPSAKEARHFTANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPMPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAGPVLGATHPHQQQQQQQSLHHHQQQQQQQLQQQQQQQQRQRSQSPEMSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPNLNLSHIKRERERDPTPEPADHEDAPHQPPPSKRVSSGLMPPGFPANFYLNPHNMAAVAAITHHHHHQQQQQDAASEGEPEDDYGNAEHNTTGNSSSMNDDNEPQQLNGHHHHHHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKNASSSKAQSSPKDAQHENGTANGGGAKLNPLETLNLLSGMQFQVARNGTGANGEQQLIVKLELNGIKYSGVLVANAAAAAAAARTDPRVEDSDTGNAAAATTEEEATSEEEANNAVKHDNSQEVDQNEAIDEEESEQPTDDIVNGVGGVGRGGTAAGGVTLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- iTF_00583458; iTF_00537289; iTF_00601546; iTF_00506640; iTF_00522737; iTF_00575357; iTF_00608221;
- 80% Identity
- -