Dsub019497.1
Basic Information
- Insect
- Drosophila suboccidentalis
- Gene Symbol
- retn
- Assembly
- GCA_037043435.1
- Location
- JBAMBK010002780.1:110821-126303[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-26 9.8e-23 80.6 0.0 2 89 272 357 271 357 0.96 2 2 1.2 2.4e+03 -0.7 0.4 6 40 505 545 459 561 0.66
Sequence Information
- Coding Sequence
- ATGCGCGAGCTGCAAGATTCATTGATGACAATTTCCCACGGCGATCGAACGGATGACGAGATGAGGGACTGCGATTCCGTGGACGGTGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCCGCTCGTCTCAGTCACACAGTCGCCGGCGGTGCTGGCCTCAACTTTGCCAGTCCGGAGCAGCAAACAGATCTGCCCCTCAGccatcatcatcagctgcCTCCGAATCATCCGCTGAATGCTCTCGGCAGCTTCATGGGCATCAGTGGACTACACAGCATTCCAAATCTGCAGCACAGCGATGTTCTCGAGAAACTCAAGATGCAAGTGCGTGACATGAAAGTTGGTCTCATGGAACAGGACTATGCAGCAGCGGCACACGCGGCGGCGTTCGGCGCCAACATGTTGCCCACGACGATCAGCTCGGCCTTTCCCCCGCTGCCCCACAACTCGGTGGCCGCAGCAGCGGCCGCTGCGTCCTTTGCCCCCGTGCCGCCTGCCAGCAATGGCGCCAGCTACAATGGTGCGGCAAGTGGAGGAACTAATGttgcagcaggagcagcagctgctgttaacCCGGCTAACAAtaatggaggaggaggaggagcgggagccggaggaggaggaggaggtaacaacaacagtaacagtaacaacaacaacaacacaatgcaCGCCAAAGAAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATTAATGATGATCCCAAACGCAAGGAGTTTCTCGAtgatttgttttcatttatgcaAAAGCGCGGCACGCCCATCAATCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTTTACGAACTGTACAATTTGGTGATAGCACGCGGCGGCCTCGTCGATGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCCGCATTCACACTCCGCACCCAATACATGAAGTATCTCTACCCGTACGAGTGCGAAAAGAAGAACCTCAGCACTCCGGCCGAGTTGCAGGCGGCCATCGATGGCAATCGTCGTGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCACTGACGCCCATTTCACGTCCACCAATGCCGGGTGGCATGCAACAGATGTCGCCACTGGCGCTGGTCACACACGCCGCGGCGGCCAACAATCAACAGGCACAGGCGGCGGCGGCCGCGGCGGCAGCGCATCGTCGACTGATGGGCGGCCCGGCATTTGGCCAGATGCCCAATCTGGTGACACAGGAGATCGAGAATCGTATGATGGAGTATCTGCAGCTAATACAGGCCAAGAAGGAGCAGAGTGCTGGCCCAGTGCATCcccaccagcaacagcagcagcagcaacagtcgctGCATCttcaccaacagcagcagcagcaacagcagcagcagctacagcagcagcagcaacaacaacaacagcgacaacgctCCCAGAGTCCCGAAATGAGCACGCGCGATGCGTTGAGCGCTCAGGTGGCGCTTTGGCACATGTACCACAACAGCAGTCCAACGGGCTCGGCCCACACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCCGACTCGCCGCCGAATCTCAATCTGAGTCACATCAAACGCGAACGCGAACGTGATCCAACACCCGAGCCGGCGGACCATGAGGATGCACCGCATCAACCGCCGCCAACCAAGCGGGTGGCGGGTGGCAGCGGCCTGATGCCACCTGGTTTTCCTGCCAACTTCTACTTGAATCCACACAACATGGCCGCCGTGGCAGCCATTacccatcatcatcaccatcagcagcagcaacaggacgCGGCGTCTGAAGGCGAGCCGGAGGATGATTACGGCAATGCCGAGCATAATACCACGGGCAATTCATCGTCCATGAACGATGACAGTGAGCCACAGCAGCTGAATGGAcatcaccaccaccaccaccaccatcatcatcagaaTCATCTGGACAAGTCGGATGACTCGGCCATTGAGAATTCACCCAGCACTTCCACAACGGCATCCGCATCCGGCGGACATCGCCACAGCTCGCCGGTGTCCACGAAAAAGAAGAATGCGAGCAGCAGTAAAGCACAGTCGAGTGCCAAGGATGCACAGCACGAGAATGGCACAGCCAATGGCGGCGGTGCCAAGTTGAATCCCCTCGAGACACTCAGTCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACTGGCGCCAATGGTGAGCAGCAGTTGATTGTCAACCTGGAGCTGAATGGCATTAAGTACTCGGGTGTCCTGGTCGccaatgcagcagcagcagcagcagccagaaCAGATCCAAGAGTCGAGGCCTCGGACACGGTaaatgctgcagctgcagccacGGCCGAGGAAGAGGCAACGTCGGAGCAGGAGGTTAACAATGCGGCTAAGCACGATAATAGCCAGGAAGTCGACCAGAACGAGGCAATTGACGAGGAGGAATCGGAACAGCCCACGGATGACATTGTGAATGGAGTGGGCGGTGTGGGCAATGGGGGCACTTCAACGGGGGGCGTAACCCTGCTCAAGGATGCTGTGGTCAGTTCGTAG
- Protein Sequence
- MRELQDSLMTISHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGISGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSAFPPLPHNSVAAAAAAASFAPVPPASNGASYNGAASGGTNVAAGAAAAVNPANNNGGGGGAGAGGGGGGNNNSNSNNNNNTMHAKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPMPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAGPVHPHQQQQQQQQSLHLHQQQQQQQQQQLQQQQQQQQQRQRSQSPEMSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPNLNLSHIKRERERDPTPEPADHEDAPHQPPPTKRVAGGSGLMPPGFPANFYLNPHNMAAVAAITHHHHHQQQQQDAASEGEPEDDYGNAEHNTTGNSSSMNDDSEPQQLNGHHHHHHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKNASSSKAQSSAKDAQHENGTANGGGAKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVANAAAAAAARTDPRVEASDTVNAAAAATAEEEATSEQEVNNAAKHDNSQEVDQNEAIDEEESEQPTDDIVNGVGGVGNGGTSTGGVTLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- iTF_00533582;
- 80% Identity
- -