Basic Information

Insect: Drosophila formosana
Gene Symbol: -
Assembly: GCA_035045625.1
Location: JAWNOW010000313.1:3052236-3060436[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.7e-05 0.0017 18.6 2.1 1 23 288 310 288 310 0.97

2 20 8.9e-06 0.00057 20.1 0.4 1 23 316 338 316 338 0.97

3 20 0.0013 0.084 13.3 0.9 1 23 344 366 344 366 0.95

4 20 1.9e-05 0.0012 19.1 3.1 1 23 372 394 372 394 0.97

5 20 4.3e-05 0.0028 18.0 4.7 1 23 400 422 400 422 0.99

6 20 7.8e-05 0.005 17.2 5.7 1 23 428 450 428 450 0.97

7 20 3.8e-07 2.5e-05 24.4 4.3 1 23 456 478 456 478 0.98

8 20 1.4e-07 8.8e-06 25.8 2.4 1 23 484 506 484 506 0.97

9 20 6.6e-06 0.00043 20.5 4.1 1 23 513 535 513 535 0.97

10 20 5.7e-06 0.00037 20.7 6.7 1 23 541 563 541 563 0.98

11 20 8e-05 0.0052 17.1 6.7 1 23 569 591 569 591 0.97

12 20 0.00014 0.009 16.4 6.5 1 23 597 619 597 619 0.98

13 20 1.2e-05 0.0008 19.7 4.5 1 23 625 647 625 647 0.98

14 20 9e-06 0.00058 20.1 8.1 1 23 653 675 653 675 0.98

15 20 7.3e-06 0.00047 20.4 7.6 1 23 681 703 681 703 0.97

16 20 8.2e-07 5.3e-05 23.4 7.7 1 23 709 731 709 731 0.98

17 20 0.00026 0.017 15.5 9.5 1 23 737 760 737 760 0.95

18 20 9.1e-05 0.0059 17.0 0.9 1 23 766 788 766 788 0.98

19 20 0.00099 0.064 13.7 3.4 1 23 798 820 798 820 0.97

20 20 1.1e-05 0.00073 19.8 1.6 1 23 826 849 826 849 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.7e-05	0.0017	18.6	2.1	1	23	288	310	288	310	0.97
2	20	8.9e-06	0.00057	20.1	0.4	1	23	316	338	316	338	0.97
3	20	0.0013	0.084	13.3	0.9	1	23	344	366	344	366	0.95
4	20	1.9e-05	0.0012	19.1	3.1	1	23	372	394	372	394	0.97
5	20	4.3e-05	0.0028	18.0	4.7	1	23	400	422	400	422	0.99
6	20	7.8e-05	0.005	17.2	5.7	1	23	428	450	428	450	0.97
7	20	3.8e-07	2.5e-05	24.4	4.3	1	23	456	478	456	478	0.98
8	20	1.4e-07	8.8e-06	25.8	2.4	1	23	484	506	484	506	0.97
9	20	6.6e-06	0.00043	20.5	4.1	1	23	513	535	513	535	0.97
10	20	5.7e-06	0.00037	20.7	6.7	1	23	541	563	541	563	0.98
11	20	8e-05	0.0052	17.1	6.7	1	23	569	591	569	591	0.97
12	20	0.00014	0.009	16.4	6.5	1	23	597	619	597	619	0.98
13	20	1.2e-05	0.0008	19.7	4.5	1	23	625	647	625	647	0.98
14	20	9e-06	0.00058	20.1	8.1	1	23	653	675	653	675	0.98
15	20	7.3e-06	0.00047	20.4	7.6	1	23	681	703	681	703	0.97
16	20	8.2e-07	5.3e-05	23.4	7.7	1	23	709	731	709	731	0.98
17	20	0.00026	0.017	15.5	9.5	1	23	737	760	737	760	0.95
18	20	9.1e-05	0.0059	17.0	0.9	1	23	766	788	766	788	0.98
19	20	0.00099	0.064	13.7	3.4	1	23	798	820	798	820	0.97
20	20	1.1e-05	0.00073	19.8	1.6	1	23	826	849	826	849	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACTTTGGGTCACAAGGGCGGCGATCAGCAGCATCATCTGAATCATCATCAACTGCAGCACCATctgcagcatcatcagcataaTAACAACAGTAAATTGGATAAGCAGCCaacggcggcaacagcaggCATTGAAATGTATAAAGTGAACATTGAGGATATATCGCAATTATTTACGTATCACGAGGTCTTTGGAAAAATCCATGGCGATGTGGTGAATCATGTGGCGGCGGTGCATGGCAGTCAGTTGCCTCCGCCTCAACTgcctccgccaccgccactgccaccgcaagcagcagcagcatccgcGACGCATTCATCGGCTagcgcagctgcagccgcagcgGCGGTGTCCACAAATAATGCAGCCGTCGCTGCTGTAATGGCCTCGGCCaatgcagcagccgcagctgcagcggccgcctcagcggcggcaacagcacaacaacagcagcagcagcaacagcagcagcagcaacaacagcagcagcaacagcagcagcaacaacagcagcagcaggttgtGACTAGCACAAATGCTGGAACCCAACAGGGAAGCGCCACGGTGACGACGACTAGCTCaggtagcaacaacagcgggaATAACAGTGGGGGcaataacagtaacagtaacagcaacaacaataacagttcgacgacgacaacaacaacgaccgGTGGTGAACTGCTGATGCCCAAAATGGAGGGCGGCATTCATGGCGTTGACGGTCAATCGAGCGTTGCCTTGGCCCCCGATGGCACACCGATTGCAACCGGGACGCATGTCTGCGATATTTGTGGgaaaatgtttcaatttcGTTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGCAAGCCATTTATGTGTCAGGTGTGCGGTCAGGGCTTTACCACATCGCAGGATTTGACCCGTCATGGTAAAATTCATATTGGCGGTCCCATGTTCACATGCATTGTCTGCTTCAATGTTTTTGCCAACAACACGAGCTTGGAGCGGCACATGAAACGTCACTCCACGGACAAACCATTCGCCTGCACCATTTGCCAAAAGACATTTGCGCGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACCGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCATCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTCACACGCAAGGAGAATTTGATAAATCACGTGCGCCAGCACACGGGAGAATCGCCGCATCGCTGCTCCTACTGCAGCAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTCACGCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAACCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACCTATTGCACGAAGACCTTCACAAGGAAGGAGCACCTAACGAATCATGTGCGCCAGCACACGGGCGATTCGCCGCATCGCTGCTCCTACTGCAAGAAGACCTTCACCCGGAAGGAGCATCTGACGAATCATGTCCGCCTGCACACTGGAGATTCGCCGCACAAGTGCGAATACTGTCAGAAGACCTTCACACGGAAGGAGCATCTCAATAATCACATGCGTCAGCATTCGAGCGACAATCCCCATTGCTGCAATGTGTGCAACAAACCGTTCACACGCAAGGAGCATCTGATCAATCATATGTCACGTTGCCACACCGGCGATCGTCCGTTCACGTGCGAAACATGCGGCAAATCGTTCCCCCTCAAGGGCAATCTGTTGTTCCATCAGCGTAGCCATACCAAGGGCCAGGAATGCGAGCGTCCGTTTGCCTGCGAAAAGTGCCCCaagaatttcatttgcaaagGTCACTTGGTCTCGCACATGCGATCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCACAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCGCATCATTCGGCGACGACCACAATGCATACCATTCAGCAGATAACAGCGGGCGCTGCAGCGGCTGGCGCCGGTGCTGTCCAGCTGACGCCAGGCCTGGTGCCGTTGGTCACCAGCTCGCTCATCTCGCACAATGCCCAGCAAacgcagaagcagcagcaagcggCCGCCGCAGTCcagcaacaagcagctgccgccgccgcggcacaacagcaacaggcagccgctgcggctgcggctcagcagcaggcagcggcCGTGgcacatcagcagcatcagcaacaggtggccgcacagcagcagcaacaacagcagcaggctgCCGCGGCcgcacatcagcaacagcagctgcagcagcagcaactgttgcagttGTCCATACAGCAGGCggcgcatcatcatcagcagcatcagcaacagcagcagcagcaacaacagcagcagcagcaacatcatcagcagcagcagcaggcacatCCGCAGGcaccgccgcagcagcaacaacagcaaccgccACCGCAGGTGCCCATCGCCCTGATCAGTGATCCAAGCGCATTGGCACGCGCCGCcatgcagctgcaacatcTGCCCACGAATGTGGAGCAACATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGHKGGDQQHHLNHHQLQHHLQHHQHNNNSKLDKQPTAATAGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQAAAASATHSSASAAAAAAAVSTNNAAVAAVMASANAAAAAAAAASAAATAQQQQQQQQQQQQQQQQQQQQQQQQQQVVTSTNAGTQQGSATVTTTSSGSNNSGNNSGGNNSNSNSNNNNSSTTTTTTTGGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKENLINHVRQHTGESPHRCSYCSKTFTRKEHLVNHIRQHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSSLISHNAQQTQKQQQAAAAVQQQAAAAAAAQQQQAAAAAAAQQQAAAVAHQQHQQQVAAQQQQQQQQAAAAAHQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQQQQHHQQQQQAHPQAPPQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00614316; iTF_00589668; iTF_00472481; iTF_00562594; iTF_00595374; iTF_00520761;
80% Identity: -