Dalb000142.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila albomicans
Gene Symbol
-
Assembly
GCA_009650485.1
Location
NC:13298915-13318156[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.2e-05 0.0013 18.6 2.1 1 23 300 322 300 322 0.97
2 20 7.4e-06 0.00044 20.1 0.4 1 23 328 350 328 350 0.97
3 20 0.0011 0.065 13.3 0.9 1 23 356 378 356 378 0.95
4 20 1.6e-05 0.00094 19.1 3.1 1 23 384 406 384 406 0.97
5 20 3.6e-05 0.0021 18.0 4.7 1 23 412 434 412 434 0.99
6 20 6.5e-05 0.0039 17.2 5.7 1 23 440 462 440 462 0.97
7 20 3.2e-07 1.9e-05 24.4 4.3 1 23 468 490 468 490 0.98
8 20 1.1e-07 6.8e-06 25.8 2.4 1 23 496 518 496 518 0.97
9 20 5.5e-06 0.00033 20.5 4.1 1 23 524 546 524 546 0.97
10 20 4.8e-06 0.00029 20.7 6.7 1 23 552 574 552 574 0.98
11 20 6.7e-05 0.004 17.1 6.7 1 23 580 602 580 602 0.97
12 20 0.00012 0.0069 16.4 6.5 1 23 608 630 608 630 0.98
13 20 1e-05 0.00062 19.7 4.5 1 23 636 658 636 658 0.98
14 20 7.5e-06 0.00045 20.1 8.1 1 23 664 686 664 686 0.98
15 20 6.1e-06 0.00037 20.4 7.6 1 23 692 714 692 714 0.97
16 20 6.8e-07 4.1e-05 23.4 7.7 1 23 720 742 720 742 0.98
17 20 0.00021 0.013 15.5 9.5 1 23 748 771 748 771 0.95
18 20 7.6e-05 0.0045 16.9 0.9 1 23 777 799 777 799 0.98
19 20 0.00083 0.05 13.7 3.4 1 23 809 831 809 831 0.97
20 20 9.5e-06 0.00057 19.8 1.6 1 23 837 860 837 860 0.96

Sequence Information

Coding Sequence
ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACTTTGGGCCACAAAGCCGGCGatccacaacagcagcagcatcaacaacatcatcatcttGCTCATcttcagcagcaacatcagcagcttcaacagcagcatcatcagaataataataataatagtaaagtGGACGGAGGGAATAAGCAACAACCGACAACGGCACACGGCGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCGCAATTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTGAATCATGTGGCGGCGGTGCATGGCAGTCAGTTGCCACCGCCACaactgccaccgccaccgccactgCCAccgcaagcaacagcagcatccacGACGCATTCATCGGCTAGCgcagctgcagccgcagcGGCGGTGTCCACAAATAATGCAACTGTCGCTGCTGTAATGGCCTCGGCCaatgcagcagccgcagctgcagctgccgcatcagcggcagcgacagcacaacaacagcagcaacaacaacaacagcagcagcagcaacaacagcagcaacagcaacaagctgtGACTAGCACAAATGCTGGAACACAGCAGGGCAGTGCCACGGTGACGACAACTAGCTCAGgtagcaacaataacaacaacagcgggaATAACAGTGGGGGCAATAATAACActagtaacagtaacagtaacaacaataacagttcgacgacaacgacaacaaccgGTGAACTGCTGATGCCGAAAATGGAGGGTGGCATCCATGGCGTCGATGGTCAATCGAGCGTTGCCTTGGCCCCCGACGGCACACCGATTGCGACTGGGACGCATGTGTGCGATATTTGTGggaaaatgtttcaatttcgTTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGCAAGCCATTTATGTGTCAGGTGTGCGGTCAGGGCTTTACCACATCGCAGGATTTGACCCGTCATGGTAAAATTCATATTGGCGGTCCCATGTTCACATGCATTGTGTGCTTCAATGTGTTTGCCAACAATACCAGTTTGGAGCGTCACATGAAACGTCATTCAACGGACAAACCATTCGCCTGCACCATTTGCCAAAAGACATTTGCGCGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTCACACGCAAGGAGAATTTGATAAATCACGTGCGCCAGCACACGGGAGAATCGCCGCATCGCTGCTCCTACTGCAGCAAGACGTTCACGCGCAAGGAGCACCTGGTGAATCATATACGCCAGCACACGGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTCACACGCAAGGAGCACTTGTTAAATCACGTGCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACCTATTGCACGAAGACCTTCACAAGGAAGGAGCACCTAACGAATCATGTGCGCCAGCACACGGGCGATTCGCCGCATCGCTGCTCCTACTGCAAGAAGACCTTCACCCGGAAGGAGCATCTGACGAATCATGTCCGCCTGCACACTGGAGACTCGCCCCACAAATGCGAATACTGTCAGAAGACCTTCACACGGAAGGAGCATCTCAATAATCATATGCGTCAGCATTCGAGCGACAATCCCCATTGCTGCAATGTGTGCAACAAGCCGTTCACACGCAAGGAGCATCTGATCAATCATATGTCACGTTGCCACACCGGCGATCGCCCCTTCACATGCGAGACATGCGGCAAATCCTTCCCCCTCAAGGGCAATCTCTTGTTCCATCAGCGTAGCCACACCAAGGGACAGGAGTGCGAACGTCCGTTTGCCTGCGAAAAATGCCCcaagaatttcatttgcaaagGTCATCTGGTCTCGCATATGCGCTCCCATTCGGGTGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCGTTCGTGGAGCGCGGCAATTTGAAGCGGCACATGAAGATGAATCACCCGGATGCCATGATGCCGCCCCCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCGCATCATTCGGCAACGACCACAATGCACACCATACAGCAGATAACAGCGGGCGCTGCAGCGGCTGGCGCCGGTGCCGTCCAGCTAACGCCAGGCCTGGTGCCGTTGGTCACCAGTACGCTCATCTCCTCGCACAATGCCCAGCAGacgcagaagcaacagcaagcagccGCTGCAGTTGCGGCacagcaacaagcagctgctgccgctgcagcacaacaacaacaggcagcggctgcagctgcagctcagCAACAGGCGGCAGCCGTGGCccatcagcagcatcagcaacaggttgccgcccagcagcagcaacaacagcaacaggctgCGGTGGCAgcccatcagcagcagcaacagcagttgcagcagcagcaattgctgcaGTTGTCCATACAGCAGGCGGCGcatcatcaccagcagcatcagcagcagcaacaacagcagcagcagcaacaccatcagcagcagcaacaggcacaTCCGCAGGCaccgccacagcagcagcaacagcagccgccacCGCAGGTGCCGATCGCCTTGATCAGCGATCCGAGCGCCTTGGCACGCGCTGCcatgcagctgcaacatctGCCCACGAATGTGGAGCAACATCCGGTGGTTTACTAA
Protein Sequence
MQHVSAASSAPSVVSAPVVTTGGGTTITLGHKAGDPQQQQHQQHHHLAHLQQQHQQLQQQHHQNNNNNSKVDGGNKQQPTTAHGGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQATAASTTHSSASAAAAAAAVSTNNATVAAVMASANAAAAAAAAASAAATAQQQQQQQQQQQQQQQQQQQQAVTSTNAGTQQGSATVTTTSSGSNNNNNSGNNSGGNNNTSNSNSNNNNSSTTTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKENLINHVRQHTGESPHRCSYCSKTFTRKEHLVNHIRQHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSTLISSHNAQQTQKQQQAAAAVAAQQQAAAAAAAQQQQAAAAAAAQQQAAAVAHQQHQQQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQHHQQQQQAHPQAPPQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00560429;
90% Identity
iTF_00509230;
80% Identity
-