Dcol000603.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila colorata
Gene Symbol
sip1
Assembly
GCA_035041545.1
Location
JAWNLD010000013.1:6000986-6004212[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 9.8e-97 5.7e-93 311.4 13.5 3 275 426 695 424 695 0.98
2 2 0.71 4.1e+03 -3.0 0.0 245 269 710 734 704 749 0.65

Sequence Information

Coding Sequence
atgtcgGACAATGAATACGAACGTTTTGAAATCACGGACTATGATCTGGACAACGAGTTCAACATAAACAGGCCACGTAGACGCCACACCAAGCACCAGCAGATTTACGGCATTTGGGCGGATGACAGCGACAACGAGAGCGAGGGCGAAAGCAGCGGTCGGCGTGGCAGGCGCGGCTTGGGTGGCGGTGGTGCCGGTAAAGCCAAGGATTACACGGCCCCGGTGAATTTCGTTGCCGGCGGCATTCAGCAGGCCGGCAAGAAGCCGAAGAAGAAGAGTCAGCAGGAGGAGAGCGCCGGCAGCGATGAGGAGGGCAGCGAGGCGGACGACAGCGACGAGGCGCGTCCCTCGTTTGGCCGCAAGCAGCCGCAGCTGATGGACAACAGCGATGCGAACAGCTCGGACAGTTCTCCGGCTAGGgaggagcagccgcagcgtGCGACGATGTCGTCGAGGAGCACGGCGGGACTCAGGCACAACTCGCACATAGCGAGCAGTCGCAATGTGGGCGCCTGGGAGCAGCATACGCGCGGCATTGGCgccaagctgctgctgcagatgggCTACGAGCCCGGCAAGGGTTTGGGCAAGGATCTGCAGGGCATCTCGCAGCCGGTGCAGGCGCATGTACGCAAGGGACGCGGCGCCATCGGCGCTTACGGACCGGAAACGGCGGCCAGCGTAGGCGGCCAGGCCAAGCCGCTGAAACTGGACGAGGATGTCAAGGAGGCCAAGGAGTTCAAGGAGCAGCTCAACAAGTGGAAGAAGGGCGGCAATGAAACGCGCGACAAGTCCGGCAAGCGCTACTACTACAAATCCGTGGAGGAGGTTATCGCTAAGGGCAAGAAATCCGACCATCTGCTCTCCGAAAAGCTGAGCAAGCGTCTGGGCAACGTCCCCGTTATAGACATGACCGGACCGGAGCGACGCGTGCTCAGCGGCTACCATGCGCTGGCCCAAAACAAAATCACGCCCGAGGAGACGCTCTACGACGCGCAGGCCGGCGAGGAGAAGGGCGAGAGGGGCACGCCCGCCTCCGTGTTCAGCATGCCCGAGCTGACGCACaatctgcagctgctggtgaGCCAGTGCGAGCAGGAGATCATTGCCATAGACAAGTCGGAGCGCGAGTGCGCGGATCGACAGGCGGGGCTGGAGCACGAGCAGCGCCATCTGCTAGAACTGGTGCAGCTGGAGCGCAATCATATGAGCACGCTGGAGGCGGCGCTGTCGCGGCTCGACCAGCTCAGCGAGAACCCGGAGCTGAGCGTGGCGCAGGCGGAGCGCCTGTTCCTCGAGCTGCAGCACGACTATGCGGCCGAATACAAGGAGTTCGGCCTGGCCGATCTCGCTGCGGGCGTCATTGCGCCGCTGCTGAAGCGCGAGCTCGGCGACTGGCAGCCGCTGGAGCAGCCgacgcagccgctgccgctgatcAAGCGCTGGCGTGCCATTCTGCAGCCGGAGGAGCCCGAACTGCCCGAGCAGCAGTCGCGCAATGTCTTCGATCCCTACTCGTCGCTCATCTGGGCGGGCGTGATGCCCTCGTTTAGGGCCTGCGCCGCCAGCTGGCAGCCCAAGGAGCACGCGCCGATGGCCGCGCTGCTGGACGCTTGGGCGCCGCTGTTGCCCACCTGGGTGCTGGACTCGGTGCTGGAGCAGCTGGTGCTGCCGCGCCTGACGGCGGGCGTGCGCGACTGGGATCCGCTGACGGACACGGTGCCCATACACAGCTGGATCCTGCCCTGGCATGGCATACTGGGCGCCAAGCTGGAGGTGTCCATCTATCCGCAGATACGCAGCAAACTGGGCGTGGCCCTGCAGGCCTGGTCACCCCAAGATCGCTCGGCGCGCGCCATGCTGACGCCCTGGCAGGCGGCCTTCCCCGAGGAGCAGTTGGTGCAGTTCCTGCTGCGCCACATCGTGCCCAAGCTGCAGGCGGTGCTCGCCGATTTCGTGATCAATCCGCTGCAGCAGAACCTGGAGCTCTGGCAGCAGGTGTGGGAGTGGCATGAGCTGCTGCCCGCCGAGCACATGGCCCAGCTGCTGGACAAGCACTTCTTTCCGCGCTGGATGCAGGTCCTGGTCATGTGGCTCAATCAGTCGCCGGACTTTGCAGAGATCTCGCGCTGGTACGCCGGCTGGAAGAGCATGTTCAGCGAGCCGATTCTGCGCGAGCCCTGCATCAAGGAGCATCTGCGTCGCGCCCTGGACATGCTCCACCGTGCCACCGATGCCGTTCTGCAGCCCACATCTGCCCCGCCACCGCCCATGCCACCAGCGCCCGCTCCGGTTCTGCTCACGCCCGTGATGCTCGTCGACGTCGTGCCGCCCGCTCAGCTGGAGTTCAAGGAGCTCGTCTCGCAGAAGTGCGCCGAACTGGGCATCATATTTGCCCCACTGCCGGGACGACGCGAACTGGGCAAGCAGATCTACCGCGTGGGCAAACTCTTCTGTTACATCGATCGCAATGTTTGCATGTTGAGCGATGTCAGCTTTACGAATTGGCAGCCCGTGGCACTAAATCAACTGCTGGAGCGGGCACAAACGGGCATCATTTAG
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNESEGESSGRRGRRGLGGGGAGKAKDYTAPVNFVAGGIQQAGKKPKKKSQQEESAGSDEEGSEADDSDEARPSFGRKQPQLMDNSDANSSDSSPAREEQPQRATMSSRSTAGLRHNSHIASSRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASVGGQAKPLKLDEDVKEAKEFKEQLNKWKKGGNETRDKSGKRYYYKSVEEVIAKGKKSDHLLSEKLSKRLGNVPVIDMTGPERRVLSGYHALAQNKITPEETLYDAQAGEEKGERGTPASVFSMPELTHNLQLLVSQCEQEIIAIDKSERECADRQAGLEHEQRHLLELVQLERNHMSTLEAALSRLDQLSENPELSVAQAERLFLELQHDYAAEYKEFGLADLAAGVIAPLLKRELGDWQPLEQPTQPLPLIKRWRAILQPEEPELPEQQSRNVFDPYSSLIWAGVMPSFRACAASWQPKEHAPMAALLDAWAPLLPTWVLDSVLEQLVLPRLTAGVRDWDPLTDTVPIHSWILPWHGILGAKLEVSIYPQIRSKLGVALQAWSPQDRSARAMLTPWQAAFPEEQLVQFLLRHIVPKLQAVLADFVINPLQQNLELWQQVWEWHELLPAEHMAQLLDKHFFPRWMQVLVMWLNQSPDFAEISRWYAGWKSMFSEPILREPCIKEHLRRALDMLHRATDAVLQPTSAPPPPMPPAPAPVLLTPVMLVDVVPPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDVSFTNWQPVALNQLLERAQTGII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00476613;
90% Identity
iTF_00561026; iTF_00547346; iTF_00526565; iTF_00550884; iTF_00475207; iTF_00534569; iTF_00490768; iTF_00506099; iTF_00616892; iTF_00530941; iTF_00563165; iTF_00530254; iTF_00541751; iTF_00567526; iTF_00598142;
80% Identity
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