Dnov007838.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila novamexicana
Gene Symbol
sip1
Assembly
GCA_003285875.3
Location
NW:7909975-7913855[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.5e-95 9.8e-92 306.9 16.9 2 275 424 694 423 694 0.97
2 2 0.33 2.1e+03 -2.5 0.0 245 269 709 733 701 749 0.53

Sequence Information

Coding Sequence
ATGTCCGACAATGAATACGAACGCTTCGAGATCACAGACTATGATTTGGACAACGAGTTCAACATTAACAGGCCACGCAGACGCCACACCAAGCACCAACAAATTTACGGCATTTGGGCGGACGACAGCGACAATGAGGGCGAGGACGAAAGCAGCGGTCGACGCGGAAGGCGTGGCTTGGGCAGCGGCTCCTCTGGCAAGCCCAAGGATTACACGGCGCCAGTAAGTTTTGTGGCCGGCGGCATACAACAAGCCGGCAAGAAGCCGAAGAGGAAGCAGGAGGAAAACGCTGCCAGCGATGAAAATGTGGACAGTGAGGCGGACGACAGCGACGAGGCGCGTCCATCATTTGGTCGCAAACAGCCGCAGCTCATGGACAACAGCGACGCCAACAGCTCGGACAGCTCTGCTGGGGCGGAGGAGCAGCCACCGCAGCGGCCCACAATGCGGAGCACAGCGGGTTTCAGGCACAGTTCGCACATACCAAGCAACCGGAATGTGGGTGCCTGGGAGCAGCATACGCGTGGCATCGGcgccaagctgctgctgcaaatggGCTATGAGCCCGGCAAGGGCCTGGGCAAGGATCTACAGGGCATCGCACAGCCAGTGCAGGCGCATGTGCGCAAGGGACGCGGCGCCATTGGCGCCTATGGACCCGAGACGGCAGCCAGCGTGGGCGGCCAGCCGGCCAAACCGCTCAAGCTCGACGAGGATGTCCGCGAGGCCAAGGAGTTCAAGGAGCAGCTAAACAAGTGGAAGaagagcggcagcagcgacacGCGCGAAAAGTCTAACAGCAAGCGCTACTACTACAAATCCGTGGAGGAGGTCATTGCCAAGGGCAAGAAATCGGATCATCTGCTCTCCGAAAAGCTGAGCAAGCGCCTGGGCAATGTGCCAGTCATCGACATGACCGGACCGGAGCGCCGCGTGCTCAGCGGCTATCATGCCTTGGCCCAGAACAAAATCACGCCCGAGGAAACGCTGTACGATGCGCAGGCGGGCGAGGAGAAGGGCGCCACGCCCGCCTCCGTGTTCAGCATGCCCGAACTGACGCACAatctgcagctgctggtgaGCCAGTGCGAGCAGGAGATCATTGCCATAGATAAGTCGGAGCGCGAGTGCGCGGATCGGCAGACGGCGCTGGAGcacgagcaacagcagctgctggagctggtgcAACTGGAGCGCAATCACATGAGCACACTGGAGGCGGCGCTGTCCCGACTCGAGCAGCTCAGCGAGAATCCCGAGCTGAGCCTGGCGCAGGCGGAACGGCTGTTCCTGGAGCTGCAGCACGACTATGCCGCCGAGTACAAAGAGTTTGGCCTCGCCGATTTGGTGGCTGGGGTCATTGCGCCTCTGCTGAAGCGCGAGCTGAGCGACTGGCAGCCACTGGAGCAGCCCACGCAGCCACTGCAGCTGATCAAGCGCTGGCGCGGCATTTTGCAGCAGGATGAACCCGagctgctggagcagcagtCGCGCAATGTTTTCGATCCGTACTCCTCGCTGATCTGGGCGGGCGTGATGCCCTCCTTTAGATCTTGCGCTGCCAGCTGGCAGCCCAAGGAGCATGCGCCGATGGCCTCATTGCTGGATGTTTGGGCGCCGCTGTTGCCCACTTGGGTACTCGACTCGGTGCTGGAGCAACTGGTGTTGCCGCGCCTGACGGCGGGCGTGCGCGATTGGGATCCGCTGACGGATACGGTGCCCATACACATCTGGATTCTGCCCTGGCATGCCATATTGGGCGTCAAGCTGGAGGAGTCCATCTATCCGCAGATACGCAGCAaactgggcgtggcactgcAGGCCTGGTCACCGCAGGATCGCTCGGCGCGCGCCATGCTAACGCCCTGGCAGGCCGCATTTCCCGAGGAGCAGCTGGTGCAATTTCTGCTGCGGCACATCATACCGAAGCTGCAGGCGGTGCTCACAGAGCTGGTTATCAATCCGCTGCAACAGAACCTCGAGCTCTGGCATCAGGTGTGGGAATGGCACGAGCTAATACCCGCCGAGCATATGGCCCAGCTGCTGGACAAGCATTTCTTTCCGCGCTGGATGCAGGTGCTGGTCATGTGGCTCAATCAGTCGCCGGACTTTGCCGAGATATCGCGCTGGTATGCCGGCTGGAAGAGCATGCTCAGCGAACCAATTCTCCGGGAGCCCTGCGTCAAGGAGCATCTGCGTCGTGCTCTCGATATGCTGCATCGCGCCACGGATGCGGTGCTCCAGCCCACAACTGCCCCGCCGCCGCCCATGCCACCAGTTGCGCCCGCTCCTGTGCTGCTCGCACCCGTGATGCTCGTCGATGTAATGCCGCCCGCTCAGCTGGAGTTCAAGGAGCTCGTCTCACAGAAATGCGCCGAACTGGGCATCATATTCGCACCGCTGCCCGGTCGACGGGAACTGGGCAAACAGATCTACCGCGTGGGCAAACTCTTCTGTTACATCGATCGCAACGTTTGCATGCTGAGCGATGTCAGCTTCACGAACTGGCAGCCGGTGGGACTTAATCAACTGCTGGAGCGTGCACAGACGGGACTTCTCTAG
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNEGEDESSGRRGRRGLGSGSSGKPKDYTAPVSFVAGGIQQAGKKPKRKQEENAASDENVDSEADDSDEARPSFGRKQPQLMDNSDANSSDSSAGAEEQPPQRPTMRSTAGFRHSSHIPSNRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIAQPVQAHVRKGRGAIGAYGPETAASVGGQPAKPLKLDEDVREAKEFKEQLNKWKKSGSSDTREKSNSKRYYYKSVEEVIAKGKKSDHLLSEKLSKRLGNVPVIDMTGPERRVLSGYHALAQNKITPEETLYDAQAGEEKGATPASVFSMPELTHNLQLLVSQCEQEIIAIDKSERECADRQTALEHEQQQLLELVQLERNHMSTLEAALSRLEQLSENPELSLAQAERLFLELQHDYAAEYKEFGLADLVAGVIAPLLKRELSDWQPLEQPTQPLQLIKRWRGILQQDEPELLEQQSRNVFDPYSSLIWAGVMPSFRSCAASWQPKEHAPMASLLDVWAPLLPTWVLDSVLEQLVLPRLTAGVRDWDPLTDTVPIHIWILPWHAILGVKLEESIYPQIRSKLGVALQAWSPQDRSARAMLTPWQAAFPEEQLVQFLLRHIIPKLQAVLTELVINPLQQNLELWHQVWEWHELIPAEHMAQLLDKHFFPRWMQVLVMWLNQSPDFAEISRWYAGWKSMLSEPILREPCVKEHLRRALDMLHRATDAVLQPTTAPPPPMPPVAPAPVLLAPVMLVDVMPPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDVSFTNWQPVGLNQLLERAQTGLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00476613;
90% Identity
iTF_00495851;
80% Identity
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