Basic Information

Insect: Drosophila bifasciata
Gene Symbol: -
Assembly: GCA_009664405.1
Location: CM019044.1:42523135-42526209[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.9e-06 0.00026 21.0 2.5 1 23 217 240 217 240 0.95

2 17 0.0046 0.31 11.3 1.6 1 23 247 269 247 269 0.97

3 17 0.19 13 6.3 0.1 2 23 301 322 300 322 0.94

4 17 6.6e-05 0.0044 17.1 2.3 1 23 414 437 414 437 0.97

5 17 0.24 16 5.9 0.5 1 19 444 462 444 465 0.94

6 17 0.022 1.5 9.2 5.3 1 23 474 496 474 496 0.95

7 17 1.6e-05 0.0011 19.1 0.7 1 23 503 526 503 526 0.97

8 17 0.00036 0.024 14.8 2.6 2 23 534 555 533 555 0.96

9 17 0.001 0.067 13.4 0.1 2 21 582 601 581 602 0.94

10 17 0.004 0.27 11.5 2.7 1 23 650 673 650 673 0.98

11 17 0.21 14 6.1 1.9 1 23 710 733 710 733 0.95

12 17 0.00011 0.0076 16.4 1.6 2 23 765 787 764 787 0.95

13 17 0.0001 0.0067 16.6 0.2 1 23 801 823 801 823 0.95

14 17 0.00012 0.0079 16.3 1.1 1 23 829 851 829 851 0.99

15 17 3e-07 2e-05 24.5 2.3 1 23 857 879 857 879 0.98

16 17 3.3e-05 0.0022 18.1 3.8 1 23 885 907 885 907 0.97

17 17 0.00042 0.028 14.6 0.4 1 22 913 934 913 937 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.9e-06	0.00026	21.0	2.5	1	23	217	240	217	240	0.95
2	17	0.0046	0.31	11.3	1.6	1	23	247	269	247	269	0.97
3	17	0.19	13	6.3	0.1	2	23	301	322	300	322	0.94
4	17	6.6e-05	0.0044	17.1	2.3	1	23	414	437	414	437	0.97
5	17	0.24	16	5.9	0.5	1	19	444	462	444	465	0.94
6	17	0.022	1.5	9.2	5.3	1	23	474	496	474	496	0.95
7	17	1.6e-05	0.0011	19.1	0.7	1	23	503	526	503	526	0.97
8	17	0.00036	0.024	14.8	2.6	2	23	534	555	533	555	0.96
9	17	0.001	0.067	13.4	0.1	2	21	582	601	581	602	0.94
10	17	0.004	0.27	11.5	2.7	1	23	650	673	650	673	0.98
11	17	0.21	14	6.1	1.9	1	23	710	733	710	733	0.95
12	17	0.00011	0.0076	16.4	1.6	2	23	765	787	764	787	0.95
13	17	0.0001	0.0067	16.6	0.2	1	23	801	823	801	823	0.95
14	17	0.00012	0.0079	16.3	1.1	1	23	829	851	829	851	0.99
15	17	3e-07	2e-05	24.5	2.3	1	23	857	879	857	879	0.98
16	17	3.3e-05	0.0022	18.1	3.8	1	23	885	907	885	907	0.97
17	17	0.00042	0.028	14.6	0.4	1	22	913	934	913	937	0.90

Sequence Information

Coding Sequence: ATGAAGCTGCCGGTAATTTGTCGTACATGTGATGCGACAGATACGGATAATCTTTTGAAGCTGGCCACTCCCACGAAGAAGTACCCAGACAAGTTGCTTTCGGACATCTTAAGCGAACTCACGGCCATCAATATTAATCTGGACACATCTACTAACCAGAAGCTGCCACAGTGCTTGTGTAGCAGTTGCACCAAGAAACTAATGGGTGCCTATTGCTACGTGAGGCAGGCGCTGGCCGCCCAAGAAATATTGCTGAAGCACATAAAAAACGGCACCGATTGCCTGCAAGAAACGCCCATGGAACTATGCGCCGAGCAGCATGTGATGGTTAAGCTAGAAACAGAGGATGAGAATGGGGATGGAGGAGGGGAAACGGAAACAAACATAAATTGCTCCGGCATACCCGAAATAATCCCAGAAGAGAGTCCCGACGAAAAGGACTTTGACAGCAAGAAATCTGTTGATCCTCTGATAATGATCGATGCTGTCAAGCAGGAACAGGATTCTGTGCTGCAGGCCAGAATAGAAAAGCAGCATGTAGATTACGAAGCCATGTCGGACTTTGAGGACGAAGAAGACTCGCTGGATGACTTGCCACTGGGACAGCGCATACAAAAATGGAAGACGGGAAGCCTTAATCTGTCGGTTTACCAGTGCAGTGAATGCCCAAAGAGCTTCAAGCGAGTCGATTATCTGAAACGACATCATGTCAAGGCGCATAAGCCAAAATCACGTTGGTTCTGCTGTTCCCTCTGCATCCGGAAGTTCAGTAGCAGCGAGGCATTGGAAATGCATCTGAAAGTCCATCGAAATCCCAAGCGCACGGCCAACATAAGTGAGCATAAAAAGGCAAAGTCTGTGGATCTGAATCTTTGCAAGCCACATGGCTACAAGCTCATCGAATGCATGATCTGCCAGAGTCAGTACAATAAAATTGCCGATCTTCGACGCCATTTGGAGGAGCATCCGGAAGTTATTAGCTTGGCAGTGCGCCCCAATATGGAGCCCAGTGACTTTGCCGAATTGTTCTATCCGGATGCCAAGGATGTTAGCGAGGATCAATTAATGGACATGATTCGCAAAGATCTGGCAGCCGGCATTTATCATCGCTTCTATTCGATAACTAATCAGTGTGGCTATGAAATGAACCTAGACAGCTCCGACACTGACAGCGAGCTGGACGTGGAGCCCGAagatcatcatcaacaacaaaagaagcgAAAAGCAAGAAAGCCGCCTTACAGCTGTGAGCTGTGCCAACAGAAGTTTGCCAGGAAGTATCAACTCTACGATCATCAGCGTCAGACGCACAGCTGGTCCGAAGCCCCACATGTTTGCGGCCGTTGCGATGGTCGGTTTGTCAGCTTGCAAATgctgcggcatcacaatgagTCACAGTGCAgaaattcccaaaagcgaTTCCTTTGCCACAAATGCCCACTGCGATTTCGATGGAAGCACAACCTGAAAGCACACTTCCGAGAACACCGAATCACGAATCAAACCTTTGAGTGTACCGAATGCAAGCGTGTTTTTGATAAGAAAAAATCCCTGACTGTTCATTTGCTGAGCGCCCATGCTGAGGAATCGAAGCTTATTCCGTGTCAGTGGTGTACGCGCAAGTTCTATCGCCATGACTATCTGGTGAAACATCTAAAGCGGCACGGCCTCAAGGAGCAGGACATTCCATTGGCCGAGACCCTGATAGCGGCCACATCGAAGCGGAATGGAGCCAAGCGCATTACCTGCAAAATATGCGACCTGCATTTTGATCGCATCACAGATTTGCGTGCCCACATTCAACTGGAGCTAAAGCTGTCGCTCTCGCACCATAGTTACGAATCGCCGCAAAACTACTCCATAACCAATGAATCGGGCTTCGAGTTGCAACTTGAAGATTCGGAGACAGAGGACGAAATACAGGCAGGGTCTGACAATCGTCCACCCTACGTCTGCGAGCTTTGCAGTGTCCAGTGCAAGCGCAAGTTCGAAATGATTCAACATCAACGGACCATGCATCGCTTCGACAAAATGCCGCATGAGTGTGATAAATGCGTTTTCAAGTGTGTGTCCAAGAATATTATGGATCATCATCTGCTGTGGCAGTGCAGCAGCACAGAGAAAAAGCATTCATGCAGCAAGTGCTCCTATAAGTTCATGTGGCCTGAGAATCTCGATAAACACGAGCGCCTTCAGCATAGCGAAGTGTCCGAGATCAGCAAAGCCGCTAAGCCGTCAAGCGGAGCTGTCGACGATGCCACCACAGAGGACGTCGGCGGAGTCCAGCTGCTGCAATGCCCGCACTGTGATCGCACCTACCAAATGAAGTCGCGACTGAACAACCACATTCGGGATGTTCATGTAAACGGCGATCGAAAGCGCAAGGACGCCATTAAGCGATTCCTTTGCTCGCTTTGTGGCCGAGAAACGCGttcggctgctgctctggTCACCCACATGCGACGACACACCGGCGAGAAGCCCTTTAAATGTGATCTATGTGAAATGGCTTTTCCGCGACACTCGGAGATGGCTTCGCATCGCAGGATGCATACGGGGGAGAAACCATTCCACTGCACAGTTTGTGGCAAGGACTTTGCACGCTCCGACAAACTGACACGGCACATGCTCACCCACAGCGGCCTGAAGCCGCACAAGTGCACGTACTGCGAGAAGAGCTACCGCCAGGCCAAAGATCTGAAGCTTCATTTGCAGCAGCACACCGGCGAATGTCCATTTATCTGTGGCACTTGTGGCGAACGATTTATACAGAACATAACACTGGAGAAGCATCGCCTAATGCGCCGTCATTTCGATTGGAGTTTGCCataa
Protein Sequence: MKLPVICRTCDATDTDNLLKLATPTKKYPDKLLSDILSELTAININLDTSTNQKLPQCLCSSCTKKLMGAYCYVRQALAAQEILLKHIKNGTDCLQETPMELCAEQHVMVKLETEDENGDGGGETETNINCSGIPEIIPEESPDEKDFDSKKSVDPLIMIDAVKQEQDSVLQARIEKQHVDYEAMSDFEDEEDSLDDLPLGQRIQKWKTGSLNLSVYQCSECPKSFKRVDYLKRHHVKAHKPKSRWFCCSLCIRKFSSSEALEMHLKVHRNPKRTANISEHKKAKSVDLNLCKPHGYKLIECMICQSQYNKIADLRRHLEEHPEVISLAVRPNMEPSDFAELFYPDAKDVSEDQLMDMIRKDLAAGIYHRFYSITNQCGYEMNLDSSDTDSELDVEPEDHHQQQKKRKARKPPYSCELCQQKFARKYQLYDHQRQTHSWSEAPHVCGRCDGRFVSLQMLRHHNESQCRNSQKRFLCHKCPLRFRWKHNLKAHFREHRITNQTFECTECKRVFDKKKSLTVHLLSAHAEESKLIPCQWCTRKFYRHDYLVKHLKRHGLKEQDIPLAETLIAATSKRNGAKRITCKICDLHFDRITDLRAHIQLELKLSLSHHSYESPQNYSITNESGFELQLEDSETEDEIQAGSDNRPPYVCELCSVQCKRKFEMIQHQRTMHRFDKMPHECDKCVFKCVSKNIMDHHLLWQCSSTEKKHSCSKCSYKFMWPENLDKHERLQHSEVSEISKAAKPSSGAVDDATTEDVGGVQLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKDAIKRFLCSLCGRETRSAAALVTHMRRHTGEKPFKCDLCEMAFPRHSEMASHRRMHTGEKPFHCTVCGKDFARSDKLTRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQNITLEKHRLMRRHFDWSLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00603495; iTF_00580904; iTF_00536196; iTF_00574982; iTF_00515030; iTF_00601194; iTF_00611484; iTF_00564073; iTF_00517870; iTF_00471780; iTF_00484566; iTF_00473943; iTF_00480990; iTF_00474643;
90% Identity: -
80% Identity: -