g3276.t1
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- -
- Assembly
- GCA_009870125.2
- Location
- CM020868.1:26674767-26677840[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.7e-08 4.3e-06 27.0 1.7 1 23 215 238 215 238 0.97 2 17 0.0021 0.16 12.7 0.4 1 23 245 267 245 267 0.98 3 17 0.23 17 6.3 0.1 2 23 299 320 298 320 0.94 4 17 4.5e-05 0.0034 17.9 3.1 1 23 412 435 412 435 0.97 5 17 0.29 22 5.9 0.5 1 19 442 460 442 463 0.94 6 17 0.027 2 9.2 5.2 1 23 472 494 472 494 0.95 7 17 4.5e-05 0.0034 17.9 0.9 1 23 501 524 501 524 0.97 8 17 0.00043 0.033 14.8 2.6 2 23 532 553 531 553 0.96 9 17 0.0038 0.29 11.8 0.0 2 21 580 599 579 600 0.94 10 17 0.0048 0.37 11.5 2.7 1 23 651 674 651 674 0.98 11 17 5.9 4.5e+02 1.8 1.6 1 23 711 734 711 734 0.86 12 17 0.00014 0.01 16.4 1.6 2 23 765 787 764 787 0.95 13 17 0.00012 0.0091 16.6 0.2 1 23 801 823 801 823 0.95 14 17 0.00014 0.011 16.3 1.1 1 23 829 851 829 851 0.99 15 17 3.6e-07 2.7e-05 24.5 2.3 1 23 857 879 857 879 0.98 16 17 3.9e-05 0.003 18.1 3.8 1 23 885 907 885 907 0.97 17 17 0.0005 0.038 14.6 0.4 1 22 913 934 913 937 0.90
Sequence Information
- Coding Sequence
- ATGAAGCTGCCGGTAGTTTGTCGGACCTGCGATTCGACAGATGCTGATAATCTTCTGAAGCTGGCCACtcccacaaaaaaatatccaGACAAATTGCTTTCGGACATCTTGAGCGAGCTCACCGacataaatattaatCTGGACACATCTGGTAACCAGAGGCTTCCACAGTGTTTGTGCAGCAGTTGCACCAAGAAATTAATGGGAGCCTATTGCTATGTGAGGCAGGCGCTGGCCGCCAATGAACTATTGCTGAAGCACCTAAAAAACGGTACCGACTGCTTGCAAGAAACGCCTATGGAACTATGTGCGGAGCAGCATGTGATGGTGAAACTAGAAAcggaggatgaggatggagGGAAAACTGAAACAGACATAAATTGCTCTGGGTTACCTGAAATGGTCCCAGAAGAGAGTCCAGACGAAAAAGATTTCGACAGCAAGAAATCTGTTGATCCTCTAATAATGATCGATTCTGTCAAGCAGGAAACTGTCCAGGCCAGTATAGAAAAGCATGGAGATGACGAAGCCGAGTCGGACTTTGAGGACGAAGACTCGCTGGATAACTTGCCACTGGGCCAGCGCATACAGAAATGGAAGACGGGAAATGGCGATGCCCTGCGAAGCTTAAACCTGTCGATTTACAAGTGCAATGAATGCCCAAAGAGCTTCAAACGAGCCGATTATCTGAAACGACATCAAATCAGGTCTCATAAGCCGGAATCGCGTTGGTTCTCCTGTTCACTCTGCATCCGGAAATTTAATAGCAGTGATGCCTTGGAAATGCATCTCAAAGTACATCGAAATTCCAAGCGCTCGGCTAATATAAGTGAGCATAAAAAGGCAAAGTCTGTGGATCTAAATCTTTGCAAACCGCATGGTTACAAGCTCATCGAATGCATGATCTGTCAGAGTCAGTACAACAAGATTGCGGACCTGCGACGCCATTTGGAGGAGCATCCGGAAATTGTTACCTTGGGAGTGCGCCCGAATATGGAACCCAATGAGTTGGCGGAGTTGTTCTATCCCGATAGATCCGATGCCAAGGATGTTGGCGAGGATCAATTAATTGACTTGATCCGCAAAGATTTGGCAGGCGGCATTTACCATCGCTTTTATTCAATAACCAATCAGTGTGGCTATGAAATGAACCTAGACAGCTCTGACACTGATAGTGAGCTGGACGTGGAGTCCGAAGATCAACAGAAGAAGCGAAAAACTAGAAAGGCCCACTACAGCTGCGAGCTGTGCCAACAGAGGTTCACAAGGAAGTATCAACTCTACGATCACCAGCGTCAGACGCACAGCTGGTCTGAAGCCCCTCATGTTTGCGGCCGTTGCGATGGGCGCTTCGTCAGCTTGCAAATGCTAAGGCATCACAATGAGTCACAGTGCAGAAATTCTCAAAAGCGATTCCTTTGCCACAAGTGCCCACTGCGGTTCCGGTGGAAGCACAACCTGCGAGCCCACTTCCGAGAGCATCGAATCGCTAATCAAACGTTTGAATGTTCCCAATGCAAGCGTGTTTTTGACAAGAAAAAATCCCTGACTGTTCATTTACTCAGCGCTCACGCTGAGGAATCGAAGCTCATTCCGTGTCAGTGGTGTACGCGCAAGTTCTATCGCCATGACTACCTGGTGAAACATCTAAAGCGTCACGGGCTCAAGGAGCAGGACATTCCGTTGGCCGAGACCCTGATAGCAGCCACATCGAAGCGAAATGGTGCCAAGCGCATTACCTGCAAAATTTGCAACCTGGATTTTGACCGCATTACAGATTTGCGCGCCCACATTCAACTGGAACTAAagctgtctctctcgctgcaCCATAGCTACGATTCCCCGCATAACTACTCCATAACCAATGAATCCGGCTTCGAGATGCAGCTTGAGGATTCGGAAACAGAGGACGAAGTACAAACTGGACTGGGCTCTGGCAACCGTCCTCCCTACGTCTGTGAGCTTTGCAGTGTCCAGTGCAAGCGCAAATTTGAAATGATCCAACATCAACGGACCATGCACCGCTTCGACAAAATGCCTCATGAGTGTGATAAATGCGTTTTTAAGTGTGTGTCCAAGAATATTATGGACCATCATCTTCTAGGGCAGTGCAGCAGCACAGAGAAGAAGCATGCATGCAGCAAGTGCACCTATAAATTTATGTGGCCTGAGAATAGGGATAAGCACGTGCGGCTCCAGCACAGCGAGGTCTCCGAAAGCACCAAAGCAGCTCCAAAGCCGACAGGTGGTCTTGCCGATATGGTCGCCACAGAGGACGGGGTCCAGCTGCTGCAATGCCCGCACTGTGATCGCACCTATCAAATGAAGTCGCGATTGAACAACCACATTCGGGACGTTCACGTAAACGGGGATCGAAAGCGCAAGGATGCGATCAAGAGATTCCTTTGCTCGCTTTGCGGCAGAGAAACACGGTCGGCTGCTGCTCTGGTTACCCACATGCGACGCCACACCGGCGAGAAGCCCTTTAAATGTGATCTATGTGAAATGGCTTTCCCGAGACACTCGGAGATGGCTTCGCATCGCAGGATGCACACGGGGGAGAAACCATTCCACTGCACAGTTTGTGGCAAGGACTTTGCCCGGTCCGACAAACTGACCCGCCACATGCTCACCCACAGCGGATTGAAGCCGCACAAGTGCACGTACTGCGAGAAGAGCTACCGGCAAGCCAAAGATCTGAAGCTCCATTTGCAGCAGCACACAGGCGAATGTCCATTTATCTGCGGCACCTGTGGCGAGCGCTTCATTCAAAACATCACACTGGAGAAGCATCGCCTAATGCGCCGCCATTTCGATTGGAGTTTGccataa
- Protein Sequence
- MKLPVVCRTCDSTDADNLLKLATPTKKYPDKLLSDILSELTDININLDTSGNQRLPQCLCSSCTKKLMGAYCYVRQALAANELLLKHLKNGTDCLQETPMELCAEQHVMVKLETEDEDGGKTETDINCSGLPEMVPEESPDEKDFDSKKSVDPLIMIDSVKQETVQASIEKHGDDEAESDFEDEDSLDNLPLGQRIQKWKTGNGDALRSLNLSIYKCNECPKSFKRADYLKRHQIRSHKPESRWFSCSLCIRKFNSSDALEMHLKVHRNSKRSANISEHKKAKSVDLNLCKPHGYKLIECMICQSQYNKIADLRRHLEEHPEIVTLGVRPNMEPNELAELFYPDRSDAKDVGEDQLIDLIRKDLAGGIYHRFYSITNQCGYEMNLDSSDTDSELDVESEDQQKKRKTRKAHYSCELCQQRFTRKYQLYDHQRQTHSWSEAPHVCGRCDGRFVSLQMLRHHNESQCRNSQKRFLCHKCPLRFRWKHNLRAHFREHRIANQTFECSQCKRVFDKKKSLTVHLLSAHAEESKLIPCQWCTRKFYRHDYLVKHLKRHGLKEQDIPLAETLIAATSKRNGAKRITCKICNLDFDRITDLRAHIQLELKLSLSLHHSYDSPHNYSITNESGFEMQLEDSETEDEVQTGLGSGNRPPYVCELCSVQCKRKFEMIQHQRTMHRFDKMPHECDKCVFKCVSKNIMDHHLLGQCSSTEKKHACSKCTYKFMWPENRDKHVRLQHSEVSESTKAAPKPTGGLADMVATEDGVQLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKDAIKRFLCSLCGRETRSAAALVTHMRRHTGEKPFKCDLCEMAFPRHSEMASHRRMHTGEKPFHCTVCGKDFARSDKLTRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQNITLEKHRLMRRHFDWSLP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00487433;
- 90% Identity
- iTF_00611484;
- 80% Identity
- -