Dlow003742.1
Basic Information
- Insect
- Drosophila lowei
- Gene Symbol
- -
- Assembly
- GCA_008121275.1
- Location
- CM017777.1:5938991-5941551[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.7e-08 3.5e-06 27.0 2.1 1 23 58 81 58 81 0.97 2 17 0.0021 0.16 12.4 0.4 1 23 88 110 88 110 0.98 3 17 0.15 11 6.5 0.1 2 23 142 163 141 163 0.94 4 17 3e-05 0.0022 18.2 3.1 1 23 255 278 255 278 0.97 5 17 0.19 14 6.2 0.5 1 19 285 303 285 306 0.94 6 17 0.018 1.3 9.5 5.2 1 23 315 337 315 337 0.95 7 17 1.4e-05 0.0011 19.2 0.7 1 23 344 367 344 367 0.97 8 17 0.00029 0.022 15.1 2.6 2 23 375 396 374 396 0.96 9 17 0.0056 0.42 11.0 0.0 2 21 423 442 422 443 0.95 10 17 0.0032 0.24 11.8 2.7 1 23 494 517 494 517 0.98 11 17 3.9 2.9e+02 2.1 1.6 1 23 554 577 554 577 0.86 12 17 9e-05 0.0067 16.7 1.6 2 23 608 630 607 630 0.95 13 17 8e-05 0.006 16.8 0.2 1 23 644 666 644 666 0.95 14 17 9.4e-05 0.007 16.6 1.1 1 23 672 694 672 694 0.99 15 17 2.4e-07 1.8e-05 24.8 2.3 1 23 700 722 700 722 0.98 16 17 2.6e-05 0.002 18.4 3.8 1 23 728 750 728 750 0.97 17 17 0.00033 0.025 14.9 0.4 1 22 756 777 756 780 0.90
Sequence Information
- Coding Sequence
- ATGATCGATTCTGTCAAGCAGGAAACTGTCCAGGCCAGGATAGAAAAGCATGACGAAGCCGTGTCGGACTTTGAGGACGAAGACTCGCTGGATAACTTGCCACTGGGCCAGCGCATACAGAAATGGAAGACGGGAAATGGCGATGCCCTGCGAAGCTTAAACCTGTCGATTTACAAGTGCAAAGAATGCCCAAAGAGCTTTAAACGAGCCGATTATCTGAAACGACATCAAATCAGGTCTCATAAGCCGGAATCGCTTTGGTTCTCCTGTTCACTCTGCATCCGAAAATTTAATAGCAGTGAGGCCTTGGAAATGCATCTCAAAGTTCATCGAAATTCCAAGCGCTCGGCTAATATAAGTGAGCATAAAAAGGCAAAGTCTGTGGATCTAAATCTTTGCAAACCGCATGGTTACAAGCTCATCGAATGCATGATCTGTCAGAGTCAGTACAACAAGATTGCGGACCTGCGACGCCATTTGGAGGAGCATCCCGAAATAGTTACCTTGGGAGTGCGCCCGAATATGGAACCCAATGAGTTGGCGGAGTTGTTCTATCCCGATAGATCCGATGCCAAGGATGTTGGCGAGGATCAATTAATTGACTTGATTCGCAAAGATTTGGCAGGCGGCATTTACCATCGCTTTTATTCAATAACCAATCAGTGTGGCTATGAAATGAACCTAGACAGCTCTGACACTGATAGTGAGCTGGACGTGGAGTCCGAAGATCAACAGAAGAAGCGGAAAACTAGAAAGGCGCACTACAGCTGCGAGCTGTGCCAACAGAGGTTCACCAGGAAGTATCAACTCTACGATCATCAGCGTCAGACGCACAGCTGGTCTGAAGCACCTCATGTTTGCGGCCGTTGCGATGGGCGCTTCGTCAGCTTGCAAATGCTAAGGCATCATAATGAGTCGCAGTGCAGAAATTCTCAAAAGCGATTCCTTTGCCACAAATGCCCACTGCGGTTCCGGTGGAAGCACAACCTGCGAGCCCACTTCCGAGAGCACCGAATCGCTAATCAAACCTTTGAATGTTCCGAATGCAAGCGTGTTTTTGACAAGAAAAAATCCCTGACTGTTCATTTACTCAGCGCCCATGCTGAGGAATCGAAGCTCATTCCGTGTCAGTGGTGTACGCGCAAGTTCTATCGCCATGACTACCTGGTGAAACATCTAAAGCGCCACGGGCTCAAGGAGCAGGACATTCCGTTAGCCGAGACCCTGATAGCAGCCACATCGAAGCGAAATGGAGCCAAGCGCATTACCTGCAAAATTTGCAACCTGGATTTTGACCGCATTATAGATTTGCGCGCCCACATTAAACTGGAACTAAAGCTGTCTCTCTCGCTGCACCATAGCTACGATTCCCCGCATAACTACTCCATAACCAATGAATCCGGCTTCGAGATGCAGCTTGAGGATTCGGAAACAGAGGACGAAATACAGACTGGACTGGGCTCTGCCAACCGTACTCCCTACGTCTGCGAGCTTTGCAGTGTCCAGTGCAAGCGCAAATTCGAAATGATCCAACATCAACGGACCATGCACCGCTTCGACAAAATGCCTCATGAGTGTGATAAATGCGTTTTTAAGTGTGTGTCCAAGacTATTATGGATCATCATCTTCTATGGCAGTGCAGCAGCACAGAGAAGAAGCATGCATGCAGCAAGTGCACTTATAAATTTATGTGGCCTGAGAATAGGGATAAGCACGTACGGCTCCAGCATAGCGAGGTCTCCGAAAGCACCAAAGCAGCACCAAAGCCGACAGGTGGTCTTGCCGATATGGTCGCCACAGAGGACGGGGTCCAGCTGCTACAATGCCCGCACTGTGATCGCACCTATCAAATGAAGTCGCGATTGAACAACCACATTCGGGACGTTCACGTAAACGGGGATCGAAAGCGCAAGGATGCGATCAAGAGATTCCTTTGCTCGCTTTGTGGCAGAGAAACAcggtctgctgctgctctggtTACCCACATGCGACGCCACACCGGCGAGAAGCCCTTTAAATGTGATCTATGTGAAATGGCTTTTCCGAGACACTCGGAGATGGCTTCGCATCGCAGGATGCACACGGGGGAGAAACCATTCCACTGCACAGTTTGTGGCAAGGACTTTGCCCGGTCCGACAAACTGACCCGCCACATGCTCACCCACAGCGGATTGAAGCCGCACAAGTGCACGTACTGCGAGAAGAGCTACCGGCAAGCCAAAGATCTGAAGCTCCATTTGCAGCAGCACACAGGCGAATGTCCATTTATCTGCGGCACCTGTGGCGAACGCTTCATACAAAACATCACCCTGGAAAAGCATCGCCTAATGCGCCGCCATTTCGATTGGAGTTTGccataa
- Protein Sequence
- MIDSVKQETVQARIEKHDEAVSDFEDEDSLDNLPLGQRIQKWKTGNGDALRSLNLSIYKCKECPKSFKRADYLKRHQIRSHKPESLWFSCSLCIRKFNSSEALEMHLKVHRNSKRSANISEHKKAKSVDLNLCKPHGYKLIECMICQSQYNKIADLRRHLEEHPEIVTLGVRPNMEPNELAELFYPDRSDAKDVGEDQLIDLIRKDLAGGIYHRFYSITNQCGYEMNLDSSDTDSELDVESEDQQKKRKTRKAHYSCELCQQRFTRKYQLYDHQRQTHSWSEAPHVCGRCDGRFVSLQMLRHHNESQCRNSQKRFLCHKCPLRFRWKHNLRAHFREHRIANQTFECSECKRVFDKKKSLTVHLLSAHAEESKLIPCQWCTRKFYRHDYLVKHLKRHGLKEQDIPLAETLIAATSKRNGAKRITCKICNLDFDRIIDLRAHIKLELKLSLSLHHSYDSPHNYSITNESGFEMQLEDSETEDEIQTGLGSANRTPYVCELCSVQCKRKFEMIQHQRTMHRFDKMPHECDKCVFKCVSKTIMDHHLLWQCSSTEKKHACSKCTYKFMWPENRDKHVRLQHSEVSESTKAAPKPTGGLADMVATEDGVQLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKDAIKRFLCSLCGRETRSAAALVTHMRRHTGEKPFKCDLCEMAFPRHSEMASHRRMHTGEKPFHCTVCGKDFARSDKLTRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQNITLEKHRLMRRHFDWSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00487433;
- 90% Identity
- iTF_00611484;
- 80% Identity
- -