Dvan023539.1
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000318.1:2569343-2572320[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.4 45 5.8 2.1 1 23 75 98 75 98 0.90 2 18 0.044 4.8 8.8 0.3 2 23 124 146 123 146 0.95 3 18 0.0034 0.37 12.3 2.7 3 23 171 191 169 191 0.96 4 18 0.00033 0.036 15.5 0.3 1 23 195 217 195 217 0.97 5 18 0.0085 0.95 11.1 1.0 1 23 224 247 224 247 0.97 6 18 0.006 0.66 11.5 1.9 2 23 255 277 254 277 0.95 7 18 2.2e-06 0.00024 22.4 0.7 2 23 283 305 282 305 0.97 8 18 0.37 41 5.9 1.4 1 23 311 334 311 334 0.90 9 18 2.1e-05 0.0023 19.3 1.9 1 23 340 363 340 363 0.98 10 18 0.017 1.9 10.1 0.0 1 23 512 535 512 535 0.93 11 18 0.034 3.7 9.2 0.8 1 20 606 625 606 628 0.91 12 18 0.00044 0.049 15.1 0.6 1 23 632 654 632 654 0.97 13 18 0.028 3.1 9.4 1.0 1 23 659 682 659 682 0.93 14 18 0.0052 0.58 11.7 1.1 2 23 690 712 689 712 0.91 15 18 0.00045 0.05 15.1 0.8 2 23 720 742 720 742 0.97 16 18 0.0011 0.12 13.8 1.0 1 23 747 769 747 769 0.95 17 18 3.4e-06 0.00038 21.7 0.6 1 23 775 797 775 797 0.99 18 18 5.2e-05 0.0057 18.0 2.2 1 23 803 826 803 826 0.98
Sequence Information
- Coding Sequence
- ATGTCCATGTCGTCTCAAGTCATTGTCTGCAAAATGAAGGgcCTTACCGGAGCCCGAAACCGAAAAGGGACTCttaaggaggaaagcggggcgGGTGAGGTCTTAACTAAAGTAGTTTCCCGCGAAAAGCAAATTCGCGAGATGCAGAAACAGTGGCATAATTTGACCACACTCCTCAAATATTCCAATGTTACTCCCTTCAAAGATAGAAACGATGCTGGGTACATCTGTGCTTATTGCTTTAAAACTTATCCTGACCCAGTTATTTTAAGACATCACACTCATTTTGATCATCTCAAAGAGAAACCTACATATAAATCTGGTTCCTGCATTAGTACTTTTGTCGCTTTTTTGGATATAGTCGATCTAAAATGCACAATTTGCGATCAAAATATGGATAGTATTAAGAATTTAACGAATCATTTGGTGACGGAGCacgataagaaatattatttaggaTCAGCAGATTACTTCCAACCGTTTAAGCTAACAAGCGAGCCGACGATGAACTGTTGTCTCTGCGGAGAAGTGTTTCACAACATGAAACTCTTGATGCAGCACATGAACGTGCACTACCGCAATTTCATTTGTACAATTTGTGGTGCTGGTTTCGTGAATAGTTTCAGACTGAACAGACACGAAACTACGCACGGAAAGAAGAAATCTAGTTTTACTTGTAGACATTGTGGGCAAATTTTCGCTGCTGAGTCCAAGAAAAAGGCTCACGTTAATACAGAACACAAAGGCATAGCTGGTGACAGCGTTTGTCAAATTTGTAAGTCACGATTCAAAAACTATTATCAGAAGACAAGACATATGATGCAAGTGCATAATGTTGAAGGTATAAAGTGTGATATGTGCgacaagaaatttaatttaaaatcgaaTTTAGTTTTACACATGAGGAGTGTCCATCTCAAGGAGAGGCCATACGAATGCTCCGTTTGCAGTATGAGCTTCTTCATAAAACGCCATATGCTAGGGCACTACATGGCGACGCATACAACTgagagaaaatttaaatgtgatCTGTGTGGGAAGGCATATGCAACCCAAAACAGtagaagaaaacatatgaaGAAGAATCACGGTATCTCGAAGAATACTATACTACCTACAAATGTAGTGAACAAGCcaaattaCGATAGCAGTGCTCAAGATGAAAATTTTAACTCAGTGCTTTTCTTTGTAGGTGACGAGACTGAAccaagatatattgagataacGATCAAACAGGAACCGACTTCTGACAATGAGCTCAATGAGTACAATGAATATAATGTGTACAATGAAAACAAGGATTATAACGAGTTTGAGAGAAGTCAGGCGGAACTTACGAAAGAAATGCAAACGATCGTTAAAATAGAGCCGTTGTCCATCGAAATTAAACCTTTAGACAAAACAAAGCTTCCAAGGAATGACAGGAAAACTAAAAAAGACCAAATTTTAGAAATGGAAAAGCATTTACAGAATATCAGTTCCATTTTACTCAACACGAACGCTACGCCTATAAGGTATCACGATGGTGCGAGTTACGTGTGCGCACTTTGTCCAGAAACGTATCCCCTACCGGCAGAACTAAAACAACACGTACTAGATGAGCACGACGAAATAGACAAGTCGTCGTTCATGGAAGGACAACGGCTGAACTCGTACATGGTGAAGTTGGATATTACGGACTTGCGTTGTCTCATTTGTCACAACGCCATCGAGAGCTTCGACTGTCTGTTTGACCATTTATCTGCAGTCCACGGGAAGATGATGCATAAAGATATACCAAATCACATCCTCCCTTTCAGATTTATAGATAACAGTTTTGATTGCGTACAGTGTCCGAAGACTTTTGAACATTTCAAGTTAGTCCAAGAACATATGCCTATACATTATCAGAACTACATATGCGAAACTTGCAACGCACCATTTGTCAATAAGAGAACGCTGCAAAATCACAACAACCGACATAAAAAAGGCGACTTCCCCTGCAGCCAATGCCCCAAAATATTTGACACAAATAGAAAAAAGCTCAATCATGAAAAATACGTGCACGACGGAGATTATAAGAGAAAGAAGTGTCCCTATTGCCAGGAGAAGTTTACTAATTATGCAAAGAAACGCTCTCATATGGTCGAGGAGCATGGAGCGGAACCGATGTCCGCAAAATGCGATATATGCCTCAAAGTGTTCAGTACTCGCGCTAGATTACGAGGGCACACGCGACGAGCGCATATGGAGTGTACGCACGCGTGTGCAGAGTGCGAGATGAAGTTCTACACGAAGATGGAACTTGTCAAGCATATGGTCAAGCACAACCCTTTAAGAACTTACCAGTGCGACATCTGTCAGAAGGCGTACGCGAGGAAGAATACTCTGCGTGAACACTTAAAAATTCACGCCAACGTTAGAAAATTCAAATGTGAATACTGTGAGAACGCGTTCATACAGAAGTACAGTTGGAAATCACATATGCGGAAGAAACATAAGATCAAAGTGCCGTAA
- Protein Sequence
- MSMSSQVIVCKMKGLTGARNRKGTLKEESGAGEVLTKVVSREKQIREMQKQWHNLTTLLKYSNVTPFKDRNDAGYICAYCFKTYPDPVILRHHTHFDHLKEKPTYKSGSCISTFVAFLDIVDLKCTICDQNMDSIKNLTNHLVTEHDKKYYLGSADYFQPFKLTSEPTMNCCLCGEVFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQIFAAESKKKAHVNTEHKGIAGDSVCQICKSRFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLVLHMRSVHLKERPYECSVCSMSFFIKRHMLGHYMATHTTERKFKCDLCGKAYATQNSRRKHMKKNHGISKNTILPTNVVNKPNYDSSAQDENFNSVLFFVGDETEPRYIEITIKQEPTSDNELNEYNEYNVYNENKDYNEFERSQAELTKEMQTIVKIEPLSIEIKPLDKTKLPRNDRKTKKDQILEMEKHLQNISSILLNTNATPIRYHDGASYVCALCPETYPLPAELKQHVLDEHDEIDKSSFMEGQRLNSYMVKLDITDLRCLICHNAIESFDCLFDHLSAVHGKMMHKDIPNHILPFRFIDNSFDCVQCPKTFEHFKLVQEHMPIHYQNYICETCNAPFVNKRTLQNHNNRHKKGDFPCSQCPKIFDTNRKKLNHEKYVHDGDYKRKKCPYCQEKFTNYAKKRSHMVEEHGAEPMSAKCDICLKVFSTRARLRGHTRRAHMECTHACAECEMKFYTKMELVKHMVKHNPLRTYQCDICQKAYARKNTLREHLKIHANVRKFKCEYCENAFIQKYSWKSHMRKKHKIKVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00457395; iTF_00780421; iTF_00781194; iTF_00776171; iTF_00782001; iTF_00782002; iTF_00778903; iTF_00778172; iTF_00782812; iTF_00776861;
- 80% Identity
- -