Hmel018421.1
Basic Information
- Insect
- Heliconius melpomene
- Gene Symbol
- -
- Assembly
- None
- Location
- Hmel217001o:14268309-14271691[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.022 1.6 9.5 1.3 1 23 100 123 100 123 0.91 2 18 0.59 41 5.0 0.2 2 23 149 171 148 171 0.92 3 18 0.0085 0.59 10.8 2.8 3 23 196 216 194 216 0.96 4 18 0.0014 0.095 13.3 0.1 1 23 220 242 220 242 0.93 5 18 0.0074 0.51 11.0 1.0 1 23 249 272 249 272 0.97 6 18 0.0013 0.093 13.3 1.3 2 23 280 302 279 302 0.95 7 18 3.8e-06 0.00026 21.4 0.6 2 23 308 330 307 330 0.97 8 18 0.32 22 5.9 1.4 1 23 336 359 336 359 0.90 9 18 1.8e-05 0.0013 19.2 1.9 1 23 365 388 365 388 0.98 10 18 0.015 1 10.0 0.0 1 23 537 560 537 560 0.93 11 18 0.028 2 9.2 0.8 1 20 631 650 631 653 0.91 12 18 0.00011 0.0074 16.8 0.3 1 23 657 679 657 679 0.97 13 18 0.024 1.7 9.4 1.0 1 23 684 707 684 707 0.93 14 18 0.0045 0.31 11.7 1.1 2 23 715 737 714 737 0.91 15 18 0.00038 0.027 15.0 0.8 2 23 745 767 745 767 0.97 16 18 0.00057 0.04 14.5 1.0 1 23 772 794 772 794 0.95 17 18 3e-06 0.00021 21.7 0.6 1 23 800 822 800 822 0.99 18 18 4.5e-05 0.0031 18.0 2.2 1 23 828 851 828 851 0.98
Sequence Information
- Coding Sequence
- ATGAAGGTGATAATATTACGTTACTACCGTACTCCCGCACCGTATCCGGGAGTACTGCCGGTATACCGTACTGCCGGGTGGGCCATTATGTCTGAAATAAAAAATAGTTGCCTTACCGGAGCCCGAAAAAAACGAAAAGGGACTAAAGTTAAGGAGGAAAGCGGGGCGGGTGAGGTCTTAACTAAAGTAGTTTACCGCGAAAAGCAATTGCGCGAGATGCAGAAACAGTGGCATAACTTGACCACGCTGCTTAAATATTCTAATGTTACACCCTTCAAGGATAGAAATGACGCGGGGTATATTTGCGCGTATTGCTTTAAAACTTATCCTGATCCCAATGTTCTAAGACAACACACTCATTTCGATCATGTCAAAGAAAAACCTACGTATAAATCTGGCTCAGGCCTTAGCAGTTTTGTAGCTTTTTTGGATATAGTAGATCTAAAATGCACAATTTGCGATCAAAATATGGACAGTATTAATAGTTTAACTGAACACTTGGTGAAAGAGCATGATAAGAAGTATTATTTAGGAACTACAGACTACTTCCAACCATTTAAACTCACAAGAGAACAGACAATGAACTGTTGTCTCTGTGGGGAAATATTTCACAACATGAAACTGTTGATGCAGCACATGAATGTGCACTACCGCAATTTCATTTGTACAATTTGTGGTGCGGGATTCGTAAATAGTTTCCGACTGAACAGGCACGAAACAGCGCACGGAAAGAAGAAATCTAGTTTTACTTGTCGACATTGTGGTCAAATTTTTGCTGCTGAATCAAAGAAAAAGGCTCACGTCAATACAGAACACAAAGGCATCGCTGGTGACAGCGTTTGCCAAATTTGTAAGGCGCGATTTAAAAATTATTATCAGAAAACTAGACATATGATGCAGGTGCATAATGTTGAAGGTATAAAATGTGATATGTGTGATAGGAGATTTAATTTAAAATCGAACTTAGTGTTGCACATGAGGAGTGTTCATCTTAAGGAGAGACCCTACGAATGTTCTGTATGTAGTATGAGCTTCTTTATTAAACGTCACATGCTGGGACACTACATGGCAACACACACAACTGAGAGAAAATTTAAATGTGACCTCTGTGGAAAAGCATACGCAACCCAAAACAGTAGAAGAAAACATATGAAGAAAAATCATGGGATCTCAAAAAATACTACAATGCCTGTAAATGTACTGAACAAGCCAAATTACGATAGCAGTGCTCAAGATGAAAATTTTAACTCAGTGCTTTTCTTTGTAGGTGACGAGACTGAATCAAGATTTATTGAGATAACGATCAAACAGGAACCTACTTCTGACGATGAACTCAATGACTACAATGAATATAATGTATACAGTGAGTCCAACGAATGTAACGACTATGAGAGAAGTCAGAAGAGAATTACGAAAAAAATGCAGACAATCGTTAAAATAGAGCCTCTATCTATTGAAATAAAACCATTGGATAAATCAAAGCTACCAAGGAATGATAGAAAAACCAAAAAAGAAAAAGTTTTAGAAATGGAAAAACATTTACAGAATATCAGTGCAATTCTACTCAATACTAACGCAACGCCTATAAGGTATCACGATGGTGCGAGCTATGTATGCGCGCTATGTCCAGAGACATATCCCCTCCCGGCAGAACTAAAGCAACATGTGCTAGACGAGCACGACGAAATAGACAAGTCATCGTTCATGGAAGGTCAACGGCTGAACTCGTACATGGTGAAGCTAGATATTACGGACTTACGTTGTCTCATTTGTAACAACGATATCGAGAGCTTCGATGCTCTGTTTGACCATTTATCCGCTGTTCACGGGAAGATTATGAACAAAGACATACCGAATCATATACTTCCTTTTAGATTTATACACAACAATTTCGATTGCGTTCAGTGCCCCAAGACTTTTGAACACTTCAAATTAGTTCAAGAGCATATGCCTGTACACTATCAGAACTACATATGCGAAATTTGTAATGCTCCATTTGTCAATAAGAGAACACTGCAAAATCACAGCAACAGACATAAAAAAGGGGATTTCCCTTGTAGCCAATGTCCAAAAATCTTTGACACAAATAGAAAAAAGCTCAATCATGAAAAGTACGTGCACGACGGAGATTATAAAAGAAAGAAATGTCCCTATTGTCAGGAGAAGTTTACCAATTATGCGAAGAAACGTTCCCATATGGTCGAGGAACACGGGGCGGAACCGATGTCGGCGAAGTGTGATATTTGCCTCAAAGTATTCAGCACTCGCGCTCGCCTGCGGGGGCACACGCGGCGCGCGCACACTGAGTGCTCGCACGCCTGCGCCGAGTGCGAGATGAAGTTCTACACGAAGATGGAGCTCATCAAACACATGGTGAAACACAACCCGCTAAAAGCCTACCAGTGCGACATCTGTCAAAAGGCGTACGCGAGGAAGAACACTCTGCGGGAACACTTAAAGATTCACGCCAACGTTAGAAAGTTTAAATGTGAATATTGTGAAAACGCGTTCATACAGAAGTACAGTTGGAAGTCTCATATGCGAAAGAAACACAAGATCAAAGTGCCGTAA
- Protein Sequence
- MKVIILRYYRTPAPYPGVLPVYRTAGWAIMSEIKNSCLTGARKKRKGTKVKEESGAGEVLTKVVYREKQLREMQKQWHNLTTLLKYSNVTPFKDRNDAGYICAYCFKTYPDPNVLRQHTHFDHVKEKPTYKSGSGLSSFVAFLDIVDLKCTICDQNMDSINSLTEHLVKEHDKKYYLGTTDYFQPFKLTREQTMNCCLCGEIFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETAHGKKKSSFTCRHCGQIFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDRRFNLKSNLVLHMRSVHLKERPYECSVCSMSFFIKRHMLGHYMATHTTERKFKCDLCGKAYATQNSRRKHMKKNHGISKNTTMPVNVLNKPNYDSSAQDENFNSVLFFVGDETESRFIEITIKQEPTSDDELNDYNEYNVYSESNECNDYERSQKRITKKMQTIVKIEPLSIEIKPLDKSKLPRNDRKTKKEKVLEMEKHLQNISAILLNTNATPIRYHDGASYVCALCPETYPLPAELKQHVLDEHDEIDKSSFMEGQRLNSYMVKLDITDLRCLICNNDIESFDALFDHLSAVHGKIMNKDIPNHILPFRFIHNNFDCVQCPKTFEHFKLVQEHMPVHYQNYICEICNAPFVNKRTLQNHSNRHKKGDFPCSQCPKIFDTNRKKLNHEKYVHDGDYKRKKCPYCQEKFTNYAKKRSHMVEEHGAEPMSAKCDICLKVFSTRARLRGHTRRAHTECSHACAECEMKFYTKMELIKHMVKHNPLKAYQCDICQKAYARKNTLREHLKIHANVRKFKCEYCENAFIQKYSWKSHMRKKHKIKVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00458240;
- 80% Identity
- -