Hnat017942.1
Basic Information
- Insect
- Heliconius nattereri
- Gene Symbol
- -
- Assembly
- GCA_013403645.1
- Location
- JAAIXI010000236.1:14674393-14677756[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.019 1.3 9.7 1.2 1 23 73 96 73 96 0.91 2 18 0.57 39 5.1 0.2 2 23 122 144 121 144 0.92 3 18 0.0083 0.56 10.9 2.8 3 23 169 189 167 189 0.96 4 18 0.00027 0.019 15.5 0.3 1 23 193 215 193 215 0.97 5 18 0.011 0.74 10.5 0.9 1 23 222 245 222 245 0.97 6 18 0.0013 0.089 13.4 1.3 2 23 253 275 252 275 0.95 7 18 3.7e-06 0.00025 21.4 0.6 2 23 281 303 280 303 0.97 8 18 0.2 14 6.5 1.5 1 23 309 332 309 332 0.91 9 18 1.8e-05 0.0012 19.3 1.9 1 23 338 361 338 361 0.98 10 18 0.015 0.99 10.1 0.0 1 23 510 533 510 533 0.93 11 18 0.028 1.9 9.2 0.8 1 20 604 623 604 626 0.91 12 18 0.0001 0.0071 16.8 0.3 1 23 630 652 630 652 0.97 13 18 0.023 1.6 9.5 1.0 1 23 657 680 657 680 0.93 14 18 0.0044 0.3 11.7 1.1 2 23 688 710 687 710 0.91 15 18 0.00037 0.026 15.1 0.8 2 23 718 740 718 740 0.97 16 18 0.00055 0.038 14.6 1.0 1 23 745 767 745 767 0.95 17 18 2.9e-06 0.0002 21.7 0.6 1 23 773 795 773 795 0.99 18 18 4.3e-05 0.003 18.0 2.2 1 23 801 824 801 824 0.98
Sequence Information
- Coding Sequence
- ATGAAGGTGATAATATTACGTTACTACCgcCTTACCGGAGCCCGAAAAAAACGAAAAGGGACTAAAGTTAAGGATGAAAGCGGGGCGGGTGAGGTCTTAACTAAAGTAGTTTACCGCGAAAAGCAATTGCGCGAGATGCAGAAACAGTGGCATAACTTGACCACGCTGcttaaatattctaatgttACACCCTTCAAGGATAGAAATGACGCAGGGTATATCTGCGCGTATTGCTTTAAAAGTTATCCTGATCCCAATGTTCTAAGACAACACACTCATTTCGATCATGTCAAAGAAAAACCTACGTATAAATCTGGCTCAGGCATTAGCAGTTTTGTAGCTTTTTTGGATATAGTAGATCTTAAATGCACAATTTGCGATCAAAATATGGACAGTATTAATAGTTTAACTGAACACTTGGTGAAAGAGCATGATAAGAAGTATTATTTAGGCACTACAGACTACTTCCAACCATTTAAACTCACAAGAGAACAGACAATGAACTGCTGTCTCTGTGGAGAAATATTTCACAACATGAAACTCTTGATGCAGCACATGAATGTGCACTACCGCAATTTCATTTGTACAATATGTGGTGCGGGATTCGTAAATAGTTTCCGACTGAACAGGCACGAAACAACGCACGGAAAGAAGAAATCTAGTTTCTCTTGTCGTCATTGTGGTCAAATTTTTGCTGCTGAATCAAAAAAAAAGGCTCACGTCAATACGGAACACAAAGGCATCGCTGGGGACAGCGTTTGCCAAATTTGTAAGGCGcgatttaaaaactattatcagAAAACTAGACATATGATGCAGGTGCATAATGTTGAAGGTATAAAATGTGATATGTGTGATAggagatttaatttaaaatcgaaCTTAGTGTTGCACATGAGGAGTGTTCATCTTAAGGAGAGACCCTACGAATGTTCTGTATGTAGTATGAGCTTCTTTATTAAACGACACATGATGGGACACTACATGGCAACACATACAACCgagagaaaatttaaatgtgacCTTTGTGGAAAAGCATATGCAACCCAAAACAGTAGAAGAAAACATATGAAGAAAAATCATGGGATCTCAAAAAATACTACAATGCCTGTAAATGTAGTGAACAAGCCAACTTAcgATAGCAGTGCTCAAggtgaaaattttaactcaGTGCTTTTCTTTGTAGGTGACGAGACTGAATCAAGATTTATTGAGATAACGATCAAACAGGAACCTACTTCTGACGATGAACTCAATGACTACaatgaatataatgtatacaGTGAGTCCAACGAATGTAACGACTATGAGAGAAGTCAGAAGAAAATTACgaaaaaaatgcaaacaaTCGTTAAAATAGAGCCTTtatctattgaaataaaaccatTGGATAAATCAAAACTACCAAGGAATGATAGAAAaaccaaaaaagaaaaagttttaGAAATGGAAAAACATTTACAGAATATCAGTGCAATTCTACTCAACACTAACGCTACGCCTATTAGGTATCACGATGGTGCGAGCTATGTGTGCGCGCTATGTCCAGAGACATATCCCCTCCCGGCAGAACTAAAGCAACATGTGCTAGACGAGCACGACGAAATAGACAAGTCATCGTTCATGGAAGGACAACGGCTGAACTCGTACATGGTGAAGCTGGATATTACGGACTTACGTTGTCTCATTTGTAACAACGATATCGAGAGCTTCGATGCTCTGTTTGACCATTTATCTGCTGTTCACGGGAAGATTATGAACAAGGACATACCGAATCATATACTTCCTTTTAGATTTATACACAACAATTTCGATTGCGTTCAGTGCCCGAAGACTTTTGAACACTTCAAATTAGTTCAAGAGCATATGCCTGTACACTATCAGAACTACATATGCGAAATTTGTAATGCTCCATTTGTCAATAAGAGAACATTGCAAAATCACAGCAACAGACATAAAAAAGGGGATTTCCCTTGCAGCCAATGTCCAAAAATCTTTGACACGAATAGAAAAAAGCTCAATCATGAAAAGTACGTGCACGACGGAGATTATAAGAGAAAGAAGTGTCCCTATTGCCAGGAGAAGTTTACCAATTACGCGAAGAAACGTTCCCATATGGTCGAGGAACACGGGGCGGAACCGATGTCGGCGAAGTGTGATATTTGTCTCAAAGTATTCAGCACTCGCGCCCGCCTGCGGGGGCACACGCGGCGCGCGCACACGGAGTGCTCGCACGCCTGCGCCGAGTGCGAGATGAAGTTCTACACGAAGATGGAGCTCATCAAACACATGGTGAAACACAACCCGCTAAAAGCCTACCAGTGCGACATCTGTCAAAAGGCGTACGCGAGGAAGAACACTCTGCGGGAACACTTAAAGATTCACGCCAACGTTCGAAAGTTTAAATGTGAATATTGTGAAAACGCGTTCATACAGAAGTACAGTTGGAAGTCTCATATGCGAAAGAAACACAAGATCAAAGTGCCGTAA
- Protein Sequence
- MKVIILRYYRLTGARKKRKGTKVKDESGAGEVLTKVVYREKQLREMQKQWHNLTTLLKYSNVTPFKDRNDAGYICAYCFKSYPDPNVLRQHTHFDHVKEKPTYKSGSGISSFVAFLDIVDLKCTICDQNMDSINSLTEHLVKEHDKKYYLGTTDYFQPFKLTREQTMNCCLCGEIFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFSCRHCGQIFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDRRFNLKSNLVLHMRSVHLKERPYECSVCSMSFFIKRHMMGHYMATHTTERKFKCDLCGKAYATQNSRRKHMKKNHGISKNTTMPVNVVNKPTYDSSAQGENFNSVLFFVGDETESRFIEITIKQEPTSDDELNDYNEYNVYSESNECNDYERSQKKITKKMQTIVKIEPLSIEIKPLDKSKLPRNDRKTKKEKVLEMEKHLQNISAILLNTNATPIRYHDGASYVCALCPETYPLPAELKQHVLDEHDEIDKSSFMEGQRLNSYMVKLDITDLRCLICNNDIESFDALFDHLSAVHGKIMNKDIPNHILPFRFIHNNFDCVQCPKTFEHFKLVQEHMPVHYQNYICEICNAPFVNKRTLQNHSNRHKKGDFPCSQCPKIFDTNRKKLNHEKYVHDGDYKRKKCPYCQEKFTNYAKKRSHMVEEHGAEPMSAKCDICLKVFSTRARLRGHTRRAHTECSHACAECEMKFYTKMELIKHMVKHNPLKAYQCDICQKAYARKNTLREHLKIHANVRKFKCEYCENAFIQKYSWKSHMRKKHKIKVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00458240;
- 80% Identity
- -