Hcyd027939.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- -
- Assembly
- GCA_036379175.1
- Location
- FAPN01002593.1:2663-6023[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.023 2.9 9.5 1.3 1 23 70 93 70 93 0.91 2 18 0.59 76 5.1 0.2 2 23 119 141 118 141 0.92 3 18 0.0086 1.1 10.9 2.8 3 23 166 186 164 186 0.96 4 18 0.00028 0.036 15.5 0.3 1 23 190 212 190 212 0.97 5 18 0.0074 0.96 11.1 1.0 1 23 219 242 219 242 0.97 6 18 0.0014 0.17 13.4 1.3 2 23 250 272 249 272 0.95 7 18 3.8e-06 0.00049 21.4 0.6 2 23 278 300 277 300 0.97 8 18 0.32 41 5.9 1.4 1 23 306 329 306 329 0.90 9 18 1.8e-05 0.0024 19.3 1.9 1 23 335 358 335 358 0.98 10 18 0.015 1.9 10.1 0.0 1 23 507 530 507 530 0.93 11 18 0.029 3.7 9.2 0.8 1 20 601 620 601 623 0.91 12 18 0.00011 0.014 16.9 0.3 1 23 627 649 627 649 0.97 13 18 0.024 3.1 9.5 1.0 1 23 654 677 654 677 0.93 14 18 0.0046 0.59 11.7 1.1 2 23 685 707 684 707 0.91 15 18 0.00039 0.05 15.1 0.8 2 23 715 737 715 737 0.97 16 18 0.00057 0.074 14.6 1.0 1 23 742 764 742 764 0.95 17 18 3e-06 0.00039 21.7 0.6 1 23 770 792 770 792 0.99 18 18 4.5e-05 0.0058 18.0 2.2 1 23 798 821 798 821 0.98
Sequence Information
- Coding Sequence
- ATGAAGGTGATAATATTACgcCTTACCGGAGCCCGAAAAAAACGAAAAGGGACTAAAGTTAAGGAGGAAAGCGGGGCGGGTGAGGTCTTAACTAAAGTAGTTTACCGCGAAAAGCAATTGCGCGAGATGCAGAAACAGTGGCATAACTTGACCACGCTgcttaaatattctaatgttACACCCTTCAAGGATAGAAATGACGCGGGGTATATCTGCGCGTATTGCTTTAAAACTTATCCTGATCCCAATGTTCTAAGACAACACACTCATTTCGATCATGTCAAAGAAAAACCTACGTATAAATCTGGCTCAGGCCTTAGCAGTTTTGTAGCTTTTTTGGATATAGTAGATCTAAAATGCACAATTTGCGATCAAAATATGGACAGTATTAATAGTTTAACTGAACACTTGGTGAAAGAGCATGATAAGAAGTATTATTTAGGAACTACAGACTACTTCCAACCATTTAAACTCACAAGAGAACAGACAATGAACTGTTGTCTCTGTGGAGAAATATTTCACAACATGAAACTGTTGATGCAGCACATGAATGTGCACTACCGCAATTTCATTTGTACAATTTGTGGTGCGGGATTCGTAAATAGTTTCCGACTGAACAGGCACGAAACAACGCACGGAAAGAAGAAATCTAGTTTTACTTGTCGACATTGTGGTCAAATTTTTGCTGCTGAATCAAAGAAAAAGGCTCACGTCAATACAGAACACAAAGGCATCGCTGGTGACAGCGTTTGCCAAATTTGTAAGGCgcgatttaaaaattattatcagaaAACTAGACATATGATGCAGGTGCATAATGTTGAAGGTATAAAATGTGATATGTGTGATAggagatttaatttaaaatcgaaCTTAGTGTTGCACATGAGGAGTGTTCATCTTAAGGAGAGACCCTATGAATGTTCTGTATGTAGTATGAGCTTCTTTATTAAACGTCACATGCTGGGACACTACATGGCAACACACACAACTgagagaaaatttaaatgtgacCTCTGTGGAAAAGCATACGCAACCCAAAACAGTAGAAGAAAACATATGAAGAAAAATCATGGGATCTCAAAAAATACTACAATGCCTGTAAATGTAGTGAACAAGCCAAATTAcgATAGCAGTGCTCaagatgaaaattttaactcaGTGCTTTTCTTTGTAGGTGACGAGACTGAATCAAGATTTATTGAGATAACAATCAAACAGGAACCTACTTCTGACGATGAACTCAATGACTACAATGAATATAATGTATACAGTGAGTCCAACGAATGTAACGACTATGAGAGAAGTCAGAAGAGAATTACGAAAAAAATGCAAACAATCGTTAAAATAGAGCCTTtatctattgaaataaaaccatTGGATAAATCAAAGCTACCAAGGAATGATAGAAaaaccaaaaaagaaaaagttttaGAAATGGAAAAACATTTACAGAATATCAGTGCAATTCTACTCAACACTAACGCTACGCCTATAAGGTATCACGATGGTGCGAGCTATGTATGCGCGCTATGTCCAGAGACATATCCCCTTCCGGCAGAACTAAAGCAACATGTGCTAGACGAGCACGACGAAATAGACAAGTCATCGTTCATGGAAGGTCAACGGCTGAACTCGTACATGGTGAAGCTAGATATTACGGACTTACGTTGTCTCATTTGTAACAACGATATCGAGAGCTTCGATGCTCTGTTTGGCCATTTATCCGCTGTTCACGGGAAGATTATGAACAAGGACATACCGAATCATATACTTCCTTTTAGATTTATACACAACAATTTCGATTGCGTTCAGTGCCCCAAGACTTTTGAACACTTCAAATTAGTTCAAGAGCATATGCCTGTACACTATCAGAACTACATATGCGAAATTTGTAATGCTCCATTTGTCAATAAGAGAACACTGCAAAATCACAGCAACAGACATAAAAAAGGGGATTTCCCTTGCAGCCAATGTCCAAAAATCTTTGacacaaatagaaaaaagctCAATCATGAAAAGTACGTGCACGACGGAGATTATAAGAGAAAGAAATGTCCCTATTGTCAGGAGAAGTTTACCAATTACGCGAAGAAACGTTCCCATATGGTCGAGGAACACGGGGCGGAACCGATGTCGGCGAAGTGTGATATTTGCCTCAAAGTATTCAGCACTCGCGCTCGCCTGCGGGGGCACACGCGGCGCGCGCACACGGAGTGCTCGCACGCCTGCGCCGAGTGCGAGATGAAGTTCTACACGAAGATGGAGCTCATCAAACACATGGTGAAACACAACCCGCTAAAAGCCTACCAGTGCGACATCTGTCAAAAGGCGTACGCGAGGAAGAACACTCTGCGGGAACACTTAAAGATTCACGCCAACGTTAGAAAGtttaaatgtgaatattgTGAAAATGCGTTCATACAGAAGTACAGTTGGAAGTCTCATATGCGAAAGAAACACAAGATCAAAGTGCCGTAA
- Protein Sequence
- MKVIILRLTGARKKRKGTKVKEESGAGEVLTKVVYREKQLREMQKQWHNLTTLLKYSNVTPFKDRNDAGYICAYCFKTYPDPNVLRQHTHFDHVKEKPTYKSGSGLSSFVAFLDIVDLKCTICDQNMDSINSLTEHLVKEHDKKYYLGTTDYFQPFKLTREQTMNCCLCGEIFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQIFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDRRFNLKSNLVLHMRSVHLKERPYECSVCSMSFFIKRHMLGHYMATHTTERKFKCDLCGKAYATQNSRRKHMKKNHGISKNTTMPVNVVNKPNYDSSAQDENFNSVLFFVGDETESRFIEITIKQEPTSDDELNDYNEYNVYSESNECNDYERSQKRITKKMQTIVKIEPLSIEIKPLDKSKLPRNDRKTKKEKVLEMEKHLQNISAILLNTNATPIRYHDGASYVCALCPETYPLPAELKQHVLDEHDEIDKSSFMEGQRLNSYMVKLDITDLRCLICNNDIESFDALFGHLSAVHGKIMNKDIPNHILPFRFIHNNFDCVQCPKTFEHFKLVQEHMPVHYQNYICEICNAPFVNKRTLQNHSNRHKKGDFPCSQCPKIFDTNRKKLNHEKYVHDGDYKRKKCPYCQEKFTNYAKKRSHMVEEHGAEPMSAKCDICLKVFSTRARLRGHTRRAHTECSHACAECEMKFYTKMELIKHMVKHNPLKAYQCDICQKAYARKNTLREHLKIHANVRKFKCEYCENAFIQKYSWKSHMRKKHKIKVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00458240;
- 80% Identity
- -