Hher006130.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- -
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000881.1:12425-15350[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.022 1.6 9.5 1.3 1 23 66 89 66 89 0.91 2 18 0.58 41 5.1 0.2 2 23 115 137 114 137 0.92 3 18 0.0084 0.59 10.9 2.8 3 23 162 182 160 182 0.96 4 18 0.00028 0.019 15.5 0.3 1 23 186 208 186 208 0.97 5 18 0.0073 0.51 11.1 1.0 1 23 215 238 215 238 0.97 6 18 0.0013 0.093 13.4 1.3 2 23 246 268 245 268 0.95 7 18 4.3e-06 0.0003 21.2 0.6 2 23 274 296 273 296 0.97 8 18 0.31 22 5.9 1.4 1 23 302 325 302 325 0.90 9 18 1.8e-05 0.0013 19.3 1.9 1 23 331 354 331 354 0.98 10 18 0.015 1 10.1 0.0 1 23 503 526 503 526 0.93 11 18 0.028 2 9.2 0.8 1 20 597 616 597 619 0.91 12 18 0.00037 0.026 15.1 0.6 1 23 623 645 623 645 0.97 13 18 0.024 1.7 9.5 1.0 1 23 650 673 650 673 0.93 14 18 0.0045 0.31 11.7 1.1 2 23 681 703 680 703 0.91 15 18 0.00038 0.027 15.1 0.8 2 23 711 733 711 733 0.97 16 18 0.00096 0.068 13.8 1.0 1 23 738 760 738 760 0.95 17 18 2.9e-06 0.00021 21.8 0.6 1 23 766 788 766 788 0.99 18 18 4.4e-05 0.0031 18.1 2.2 1 23 794 817 794 817 0.98
Sequence Information
- Coding Sequence
- ATGCATGgcCTTACCGGAGCCCGAAAAAAGCCAAAAGGGACTAAAGTTAAGGAGGAAAGCGGGGCGGGTGAGGTCTTAACTAAAGTAGTTTACCGCGAAAAGCAATTGCGCGAGATGCAGAAACAGTGGCATAACTTAACCACGCTGCTTAAATATTCTAATGTTACACCCTTCAAGGATAGAAATGATGCGGGGTATATCTGCGCTTATTGCTTTAAAACTTATCCTGATCCCAATGTTCTAAGACAACACACTCATTTCGATCATGTCAAAGAAAAACCTACGTATAAATCTGGCTCAGGCATTAGCAGTTTTGTAGCTTTTTTGGATATAGTAGATCTAAAATGCACAATTTGCGATCAAAATATGGacagtattaatagtttaaCTGAACACTTAGTGAAAGAGCATGATAAGAAGTATTATTTAGGAACTACAGATTACTTCCAACCATTTAAACTCACCAGAGAACAGACAATGAACTGTTGTCTCTGTGGAGAAATATTTCACAACATGAAACTCTTGATGCAGCACATGAATGTGCACTACCGCAATTTCATTTGTACAATTTGTGGTGCGGGATTCGTAAATAGTTTCCGGCTGAACAGGCACGAAACAACGCACGGGAAGAAAAAATCTAGTTTCACATGTCGACATTGTGGTCAAATTTTTGCTGCTGAATCAAAGAAAAAGGCTCACGTCAATACAGAACACAAAGGCATCGCTGGTGACAGCGTTTGCCAAATTTGTAAAGCgcgatttaaaaattattatcagaAAACTAGACATATGATGCAGGTGCATAATGTTGAAGGTATAAAATGTGATATGTGTGAcaggaaatttaatttaaaatcgaaCTTAGTTCTACACATGAGGAGTGTTCATCTTAAGGAGAGACCCTACGAATGTTCTGTATGTAGTATGAGCTTCTTCATTAAACGTCACATGCTGGGACACTACATGGCAACACATACGACTGAAAGGAAATTTAAATGTGACCTCTGTGGAAAAGCATACGCAACCCAAAACAGTAGaagaaaacatatgaaaaaaaatcatgggATCTCAAAAAATACTACAATGCCTGCAAATGTGGTGAATAAGccaaattaCCATAGCAGTGCTCAAgatgaaaattttaacttagtGCTTTTCTTTGTAGGTGACGAGACTGAATCAAGATTTATTGAGATAACGATCAAACAGGAACCTACTTCTGACAATGAATTCAATGACTACAATGAATATAATGTATACAGTGAGTCCAACGAATGTAACGACTATGCGAGAAGTCAGAAGAGAATTACGAAAAAAATGCAAACAATCGTTAAAATAGAGCCGTTATCTATTGAAATAAAACCATTGGATAAATCAAAGCTACCAAGAAATGATAGAAAaaccaaaaaagaaaaagtgttAGAAATGGAAAAACATTTACAGAATATCAGTGCAATTCTACTCAACACTAACGCTACGCCTATAAGGTATCACGATGGTGCGAGCTATGTGTGTGCGCTGTGTCCAGAGACATATCCCCTCCCGGCAGAACTAAAGCAACATGTGCTAGACGAGCACGACGAAATAGACAAATCATCGTTCATGGAAGGACAACGGCTGAACTCGTACATGGTGAAGCTAGATATTACGGAATTACGTTGTCTCATTTGTCACAATGATATCGAGAGCTTCGATGCTCTGTTTGATCATTTATCTGCTGTTCACGGGAAGATTATGAACAAGGACATACCAAATCATATACTTCCTTTCAGATTTATACATAACAGTTTCGATTGCGTTCAGTGTCCCAAGACTTTTGAACACTTCAAATTAGTTCAAGAGCATATGCCTGTACACTACCAGAACTACATATGCGAAACTTGTAATGCTCCGTTTGTCAATAAGAGAACACTGCAAAATCACAACAACAGACATAAAAAAGGGGATTTCCCTTGCAGCCAATGTCCAAAAATCTTTGACACGAATAGAAAAAAGCTCAATCATGAAAAGTACGTACACGACGGAGATTATAAGAGAAAGAAGTGTCCCTATTGCCAGGAGAAGTTTACCAATTACGCGAAGAAACGTTCCCATATGGTTGAAGAACACGGGGCGGAACCGATGTCAGCGAAATGCGATATATGCCTCAAGGTGTTCAGCACTCGTGCCCGCCTCAGGGGACACACGCGGCGCGCGCACATGGAGTGCACGCACGCCTGTGCGGAGTGCGAGATGAAGTTCTACACAAAGATGGAGCTCGTCAAACACATGGTGAAACACAACCCGCTAAGAACCTACCAGTGCGACATCTGTCAAAAGGCGTACGCGAGGAAGAACACTCTGCGAGAACATTTAAAGATTCACGCCAACGTTAGAAAGTTCAAATGTGAATATTGTGAAAACGCATTCATACAGAAGTACAGTTGGAAGTCTCATATGCGAAAAAAACACAAGATCAAAGTGCCGTAA
- Protein Sequence
- MHGLTGARKKPKGTKVKEESGAGEVLTKVVYREKQLREMQKQWHNLTTLLKYSNVTPFKDRNDAGYICAYCFKTYPDPNVLRQHTHFDHVKEKPTYKSGSGISSFVAFLDIVDLKCTICDQNMDSINSLTEHLVKEHDKKYYLGTTDYFQPFKLTREQTMNCCLCGEIFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQIFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDRKFNLKSNLVLHMRSVHLKERPYECSVCSMSFFIKRHMLGHYMATHTTERKFKCDLCGKAYATQNSRRKHMKKNHGISKNTTMPANVVNKPNYHSSAQDENFNLVLFFVGDETESRFIEITIKQEPTSDNEFNDYNEYNVYSESNECNDYARSQKRITKKMQTIVKIEPLSIEIKPLDKSKLPRNDRKTKKEKVLEMEKHLQNISAILLNTNATPIRYHDGASYVCALCPETYPLPAELKQHVLDEHDEIDKSSFMEGQRLNSYMVKLDITELRCLICHNDIESFDALFDHLSAVHGKIMNKDIPNHILPFRFIHNSFDCVQCPKTFEHFKLVQEHMPVHYQNYICETCNAPFVNKRTLQNHNNRHKKGDFPCSQCPKIFDTNRKKLNHEKYVHDGDYKRKKCPYCQEKFTNYAKKRSHMVEEHGAEPMSAKCDICLKVFSTRARLRGHTRRAHMECTHACAECEMKFYTKMELVKHMVKHNPLRTYQCDICQKAYARKNTLREHLKIHANVRKFKCEYCENAFIQKYSWKSHMRKKHKIKVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00458240;
- 80% Identity
- -