Hhew007107.2
Basic Information
- Insect
- Heliconius hewitsoni
- Gene Symbol
- -
- Assembly
- GCA_018230445.1
- Location
- DWAN01005600.1:1688-5068[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0065 0.53 11.5 1.4 1 23 81 104 81 104 0.91 2 18 0.71 58 5.1 0.2 2 23 130 152 129 152 0.92 3 18 0.01 0.84 10.8 2.8 3 23 177 197 175 197 0.96 4 18 0.00034 0.028 15.5 0.3 1 23 201 223 201 223 0.97 5 18 0.0089 0.73 11.0 1.0 1 23 230 253 230 253 0.97 6 18 0.0016 0.13 13.4 1.3 2 23 261 283 260 283 0.95 7 18 5.3e-06 0.00043 21.2 0.6 2 23 289 311 288 311 0.97 8 18 0.38 31 5.9 1.4 1 23 317 340 317 340 0.90 9 18 2.2e-05 0.0018 19.2 1.9 1 23 346 369 346 369 0.98 10 18 0.018 1.5 10.1 0.0 1 23 518 541 518 541 0.93 11 18 0.034 2.8 9.2 0.8 1 20 612 631 612 634 0.91 12 18 0.00046 0.038 15.1 0.6 1 23 638 660 638 660 0.97 13 18 0.029 2.4 9.4 1.0 1 23 665 688 665 688 0.93 14 18 0.0055 0.45 11.7 1.1 2 23 696 718 695 718 0.91 15 18 0.00047 0.038 15.1 0.8 2 23 726 748 726 748 0.97 16 18 0.0012 0.097 13.8 1.0 1 23 753 775 753 775 0.95 17 18 3.6e-06 0.0003 21.7 0.6 1 23 781 803 781 803 0.99 18 18 5.4e-05 0.0044 18.0 2.2 1 23 809 832 809 832 0.98
Sequence Information
- Coding Sequence
- ATGAAGCCTTCTGATTGTGAAGATAATATTACGTTAGCAGTACTATCGTACGgcCTTACCGGAGCCCGAAAAAAGCGAAAAGGGACTAAAATTAAAGAGGAAAGCGGGGCGGGTGAGGTCTTAACTAAAGTAGTTTACCGCGAAAAGCAATTGCGCGAGATGCAGAAACAGTGGCATAACTTGACCACGCTGCTTAAATATTCTAATGTTACACCCTTCAAGGATAGAAATGATGCGGGGTATATCTGCGCTTATTGCTTTAAAACTTTTCCTGATCCCAATGTTCTAAGACAACACACTCATTTTGATCATGTCAAAGAAAAACCTACGTATAAATCTGGCTCAGGCATTAGCAGTTTTGTAGCTTTTTTGGATATAGTAGATCTAAAATGCACAATTTGCGATCAAAATATGGACAGTATTAATAGTTTAACTGAACACCTAGTGAAAGAGCACGATAAGAAGTATTATTTAGGAACTACAGATTACTTCCAACCATTTAAACTCACTAGAGAACAGACAATGAACTGTTGCCTCTGTGGAGAAATATTTCACAACATGAAACTCTTGATGCAACACATGAATGTGCACTACCGCAATTTCATTTGTACAATTTGTGGTGCGGGATTCGTTAATAGTTTCCGACTGAACAGGCACGAAACAACGCACGGGAAGAAGAAATCTAGTTTCACATGTCGACATTGTGGTCAAATTTTTGCTGCTGAATCAAAGAAAAAGGCTCACGTCAATACAGAACACAAAGGCATCGCTGGTGACAGCGTTTGCCAAATTTGTAAGGCgcgatttaaaaattattatcagaaAACTAGACATATGATGCAAGTACATAATGTTGAAGGTATAAAATGTGATATGTGTGAcaggaaatttaatttaaaatcgaaCTTAGTGTTACACATGAGGAGTGTTCATCTTAAGGAAAGACCTTACGAATGTTCTGTATGTAGTATGAGCTTCTTTATTAAACGTCACATGCTGGGACACTACATGGCAACACATACGACTGAGaggaaatttaaatgtgaCCTCTGTGGAAAAGCATACGCAACCCAAAACAGTAGAAgaaaacatatgaaaaaaaatcatgggATCTCAAAAAATACTGCAATGCTTGCAAATGTGGTGAACAAGCCAAATTACGATAGCAGTGCTCaagatgaaaattttaacttagtGCTTTTCTTTGTAGGTGACGAGACTGAATCAAGATTTATTGAGATAACAATCAAACAGGAACCTACTTCTGACAATGAATACAATGACTACAatgaatataatgtatacaGTGAATCTAACGAATGTAACGACTATGCGAGAAGTCAGAAGAGAATTACgaaaaaaatgcaaacaaTCGTTAAAATAGAGCCGTtatctattgaaataaaaccatTGGATAAATCAAAACTACCAAGAAATGATAGAAAAACCAAAAAAGAAAAGGTGTTGGAAATGGAAAAACATTTACAGAATATCAGTGCAATTCTACTCAACACTAACGCTACGCCTATAAGGTATCACGATGGTGCGAGCTATGTGTGCGCGCTGTGTCCAGAGACATATCCCCTCCCGGCAGAACTAAAGCAACATGTGCTAGACGAGCACGACGAAATAGACAAATCATCGTTCATGGAAGGACAACGGCTGAACTCGTACATGGTGAAGCTAGATATTACGGAATTACGTTGTCTTATTTGTCACAATGATATCGAGAGCTTCGATGCTCTGTTTGATCATTTATCTGCTGTTCACGGGAAGATTATGAACAAGGACATACCAAATCATATACTTCCCTTCAGATTTATACATAACAGTTTCGATTGTGTTCAGTGTCCCAAGACTTTTGAACACTTCAAATTAGTTCAAGAGCACATGCCTGTACACTACCAGAACTACATATGCGAAACTTGTAATGCTCCATTTGTCAATAAGAGAACATTGCAAAATCACAACAACAGACATAAAAAAGGGGATTTCCCTTGCAGCCAATGTCCAAAAATCTTTGACACGAATAGAAAAAAGCTCAATCATGAAAAGTACGTACACGATGGAGATTATAAGAGAAAGAAGTGTCCCTATTGCCAGGAGAAGTTTACCAATTACGCGAAGAAACGTTCCCATATGGTTGAAGAACACGGGGCGGAACCGATGTCAGCGAAATGCGATATATGCCTCAAGGTGTTCAGTACTCGTGCCCGCCTCAGAGGACACACGCGGCGCGCACACATGGAGTGCACGCACGCCTGTGCCGAGTGCGAGATGAAGTTCTACACGAAGATGGAGCTCGTCAAGCACATGGTGAAACACAACCCGCTAAGAACCTACCAGTGCGACATCTGTCAAAAGGCGTACGCGAGGAAGAACACTTTGCGGGAACATTTAAAGATTCACGCCAACGTTAGAAAATTCAAATGTGAATATTGTGAAAACGCATTCATACAGAAGTACAGTTGGAAATCTCATATGCGAAAAAAACACAAGATCAAAGTGCCGTAA
- Protein Sequence
- MKPSDCEDNITLAVLSYGLTGARKKRKGTKIKEESGAGEVLTKVVYREKQLREMQKQWHNLTTLLKYSNVTPFKDRNDAGYICAYCFKTFPDPNVLRQHTHFDHVKEKPTYKSGSGISSFVAFLDIVDLKCTICDQNMDSINSLTEHLVKEHDKKYYLGTTDYFQPFKLTREQTMNCCLCGEIFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQIFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDRKFNLKSNLVLHMRSVHLKERPYECSVCSMSFFIKRHMLGHYMATHTTERKFKCDLCGKAYATQNSRRKHMKKNHGISKNTAMLANVVNKPNYDSSAQDENFNLVLFFVGDETESRFIEITIKQEPTSDNEYNDYNEYNVYSESNECNDYARSQKRITKKMQTIVKIEPLSIEIKPLDKSKLPRNDRKTKKEKVLEMEKHLQNISAILLNTNATPIRYHDGASYVCALCPETYPLPAELKQHVLDEHDEIDKSSFMEGQRLNSYMVKLDITELRCLICHNDIESFDALFDHLSAVHGKIMNKDIPNHILPFRFIHNSFDCVQCPKTFEHFKLVQEHMPVHYQNYICETCNAPFVNKRTLQNHNNRHKKGDFPCSQCPKIFDTNRKKLNHEKYVHDGDYKRKKCPYCQEKFTNYAKKRSHMVEEHGAEPMSAKCDICLKVFSTRARLRGHTRRAHMECTHACAECEMKFYTKMELVKHMVKHNPLRTYQCDICQKAYARKNTLREHLKIHANVRKFKCEYCENAFIQKYSWKSHMRKKHKIKVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248314;
- 90% Identity
- iTF_00458240;
- 80% Identity
- iTF_00776171;